Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2904325Fold c.72: Ribokinase-like [53612] (3 superfamilies)
    core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
    potential superfamily: members of this fold have similar functions but different ATP-binding sites
  4. 2904995Superfamily c.72.2: MurD-like peptide ligases, catalytic domain [53623] (3 families) (S)
    has extra strand located between strands 1 and 2
  5. 2905053Family c.72.2.0: automated matches [254328] (1 protein)
    not a true family
  6. 2905054Protein automated matches [254749] (4 species)
    not a true protein

Species:

  1. 2905055Acinetobacter baumannii [TaxId:470] [350527] (1 PDB entry)
  2. 2905057Neisseria meningitidis [TaxId:122586] [346327] (1 PDB entry)
  3. 2905060Pseudomonas aeruginosa, PA01 [TaxId:208964] [271624] (6 PDB entries)
    1. Domain for 4cvk:
    2. Domain for 4cvl:
    3. Domain for 4cvm:
    4. Domains for 5vvw:
      1. 2905079Domain d5vvwa2: 5vvw A:104-319 [334989]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
      2. 2905080Domain d5vvwb2: 5vvw B:104-319 [335035]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
      3. 2905081Domain d5vvwc2: 5vvw C:104-319 [334948]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
      4. 2905082Domain d5vvwd2: 5vvw D:104-319 [334981]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
      5. 2905083Domain d5vvwe2: 5vvw E:104-318 [334954]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
      6. 2905084Domain d5vvwf2: 5vvw F:104-319 [334964]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
      7. 2905085Domain d5vvwg2: 5vvw G:104-319 [335017]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
      8. 2905086Domain d5vvwh2: 5vvw H:104-319 [334992]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
    5. Domains for 6x9f:
      1. 2905063Domain d6x9fa2: 6x9f A:97-311 [393364]
        Other proteins in same PDB: d6x9fa1, d6x9fa3, d6x9fb1, d6x9fb3, d6x9fc1, d6x9fc3, d6x9fd1, d6x9fd3, d6x9fe1, d6x9fe3, d6x9ff1, d6x9ff3, d6x9fg1, d6x9fg3, d6x9fh1, d6x9fh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uxp
      2. 2905064Domain d6x9fb2: 6x9f B:97-311 [393274]
        Other proteins in same PDB: d6x9fa1, d6x9fa3, d6x9fb1, d6x9fb3, d6x9fc1, d6x9fc3, d6x9fd1, d6x9fd3, d6x9fe1, d6x9fe3, d6x9ff1, d6x9ff3, d6x9fg1, d6x9fg3, d6x9fh1, d6x9fh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uxp
      3. 2905065Domain d6x9fc2: 6x9f C:97-312 [393277]
        Other proteins in same PDB: d6x9fa1, d6x9fa3, d6x9fb1, d6x9fb3, d6x9fc1, d6x9fc3, d6x9fd1, d6x9fd3, d6x9fe1, d6x9fe3, d6x9ff1, d6x9ff3, d6x9fg1, d6x9fg3, d6x9fh1, d6x9fh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uxp
      4. 2905066Domain d6x9fd2: 6x9f D:97-311 [393299]
        Other proteins in same PDB: d6x9fa1, d6x9fa3, d6x9fb1, d6x9fb3, d6x9fc1, d6x9fc3, d6x9fd1, d6x9fd3, d6x9fe1, d6x9fe3, d6x9ff1, d6x9ff3, d6x9fg1, d6x9fg3, d6x9fh1, d6x9fh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uxp
      5. 2905067Domain d6x9fe2: 6x9f E:97-311 [393266]
        Other proteins in same PDB: d6x9fa1, d6x9fa3, d6x9fb1, d6x9fb3, d6x9fc1, d6x9fc3, d6x9fd1, d6x9fd3, d6x9fe1, d6x9fe3, d6x9ff1, d6x9ff3, d6x9fg1, d6x9fg3, d6x9fh1, d6x9fh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uxp
      6. 2905068Domain d6x9ff2: 6x9f F:97-312 [393256]
        Other proteins in same PDB: d6x9fa1, d6x9fa3, d6x9fb1, d6x9fb3, d6x9fc1, d6x9fc3, d6x9fd1, d6x9fd3, d6x9fe1, d6x9fe3, d6x9ff1, d6x9ff3, d6x9fg1, d6x9fg3, d6x9fh1, d6x9fh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uxp
      7. 2905069Domain d6x9fg2: 6x9f G:97-311 [393251]
        Other proteins in same PDB: d6x9fa1, d6x9fa3, d6x9fb1, d6x9fb3, d6x9fc1, d6x9fc3, d6x9fd1, d6x9fd3, d6x9fe1, d6x9fe3, d6x9ff1, d6x9ff3, d6x9fg1, d6x9fg3, d6x9fh1, d6x9fh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uxp
      8. 2905070Domain d6x9fh2: 6x9f H:97-311 [393260]
        Other proteins in same PDB: d6x9fa1, d6x9fa3, d6x9fb1, d6x9fb3, d6x9fc1, d6x9fc3, d6x9fd1, d6x9fd3, d6x9fe1, d6x9fe3, d6x9ff1, d6x9ff3, d6x9fg1, d6x9fg3, d6x9fh1, d6x9fh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uxp
    6. Domains for 6x9n:
      1. 2905071Domain d6x9na2: 6x9n A:104-318 [393243]
        Other proteins in same PDB: d6x9na1, d6x9na3, d6x9nb1, d6x9nb3, d6x9nc1, d6x9nc3, d6x9nd1, d6x9nd3, d6x9ne1, d6x9ne3, d6x9nf1, d6x9nf3, d6x9ng1, d6x9ng3, d6x9nh1, d6x9nh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uyd, val
      2. 2905072Domain d6x9nb2: 6x9n B:104-319 [393347]
        Other proteins in same PDB: d6x9na1, d6x9na3, d6x9nb1, d6x9nb3, d6x9nc1, d6x9nc3, d6x9nd1, d6x9nd3, d6x9ne1, d6x9ne3, d6x9nf1, d6x9nf3, d6x9ng1, d6x9ng3, d6x9nh1, d6x9nh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uyd, val
      3. 2905073Domain d6x9nc2: 6x9n C:104-319 [393247]
        Other proteins in same PDB: d6x9na1, d6x9na3, d6x9nb1, d6x9nb3, d6x9nc1, d6x9nc3, d6x9nd1, d6x9nd3, d6x9ne1, d6x9ne3, d6x9nf1, d6x9nf3, d6x9ng1, d6x9ng3, d6x9nh1, d6x9nh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uyd, val
      4. 2905074Domain d6x9nd2: 6x9n D:104-319 [393218]
        Other proteins in same PDB: d6x9na1, d6x9na3, d6x9nb1, d6x9nb3, d6x9nc1, d6x9nc3, d6x9nd1, d6x9nd3, d6x9ne1, d6x9ne3, d6x9nf1, d6x9nf3, d6x9ng1, d6x9ng3, d6x9nh1, d6x9nh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uyd, val
      5. 2905075Domain d6x9ne2: 6x9n E:104-319 [393282]
        Other proteins in same PDB: d6x9na1, d6x9na3, d6x9nb1, d6x9nb3, d6x9nc1, d6x9nc3, d6x9nd1, d6x9nd3, d6x9ne1, d6x9ne3, d6x9nf1, d6x9nf3, d6x9ng1, d6x9ng3, d6x9nh1, d6x9nh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uyd, val
      6. 2905076Domain d6x9nf2: 6x9n F:104-319 [393224]
        Other proteins in same PDB: d6x9na1, d6x9na3, d6x9nb1, d6x9nb3, d6x9nc1, d6x9nc3, d6x9nd1, d6x9nd3, d6x9ne1, d6x9ne3, d6x9nf1, d6x9nf3, d6x9ng1, d6x9ng3, d6x9nh1, d6x9nh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uyd, val
      7. 2905077Domain d6x9ng2: 6x9n G:104-319 [393240]
        Other proteins in same PDB: d6x9na1, d6x9na3, d6x9nb1, d6x9nb3, d6x9nc1, d6x9nc3, d6x9nd1, d6x9nd3, d6x9ne1, d6x9ne3, d6x9nf1, d6x9nf3, d6x9ng1, d6x9ng3, d6x9nh1, d6x9nh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uyd, val
      8. 2905078Domain d6x9nh2: 6x9n H:104-319 [393233]
        Other proteins in same PDB: d6x9na1, d6x9na3, d6x9nb1, d6x9nb3, d6x9nc1, d6x9nc3, d6x9nd1, d6x9nd3, d6x9ne1, d6x9ne3, d6x9nf1, d6x9nf3, d6x9ng1, d6x9ng3, d6x9nh1, d6x9nh3
        automated match to d4hv4a2
        complexed with cl, dms, edo, uyd, val
  4. 2905088Yersinia pestis [TaxId:214092] [256291] (1 PDB entry)

More info for Protein automated matches from c.72.2.0: automated matches

Timeline for Protein automated matches from c.72.2.0: automated matches: