Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2137471Fold c.72: Ribokinase-like [53612] (3 superfamilies)
    core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
    potential superfamily: members of this fold have similar functions but different ATP-binding sites
  4. 2137975Superfamily c.72.2: MurD-like peptide ligases, catalytic domain [53623] (3 families) (S)
    has extra strand located between strands 1 and 2
  5. 2138030Family c.72.2.0: automated matches [254328] (1 protein)
    not a true family
  6. 2138031Protein automated matches [254749] (2 species)
    not a true protein

Species:

  1. 2138032Pseudomonas aeruginosa, PA01 [TaxId:208964] [271624] (4 PDB entries)
    1. Domain for 4cvk:
    2. Domain for 4cvl:
    3. Domain for 4cvm:
    4. Domains for 5vvw:
      1. 2291647Domain d5vvwc2: 5vvw C:104-319 [334948]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
      2. 2291653Domain d5vvwe2: 5vvw E:104-318 [334954]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
      3. 2291663Domain d5vvwf2: 5vvw F:104-319 [334964]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
      4. 2291680Domain d5vvwd2: 5vvw D:104-319 [334981]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
      5. 2291688Domain d5vvwa2: 5vvw A:104-319 [334989]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
      6. 2291691Domain d5vvwh2: 5vvw H:104-319 [334992]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
      7. 2291716Domain d5vvwg2: 5vvw G:104-319 [335017]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
      8. 2291734Domain d5vvwb2: 5vvw B:104-319 [335035]
        Other proteins in same PDB: d5vvwa1, d5vvwa3, d5vvwb1, d5vvwb3, d5vvwc1, d5vvwc3, d5vvwd1, d5vvwd3, d5vvwe1, d5vvwe3, d5vvwf1, d5vvwf3, d5vvwg1, d5vvwg3, d5vvwh1, d5vvwh3
        automated match to d4hv4a2
        complexed with edo
  2. 2138036Yersinia pestis [TaxId:214092] [256291] (1 PDB entry)

More info for Protein automated matches from c.72.2.0: automated matches

Timeline for Protein automated matches from c.72.2.0: automated matches: