SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.84: Phosphoglucomutase, first 3 domains [53737] (1 superfamily)
consists of three similar domains with 3 layers (a/b/a) each; duplication
core: mixed beta-sheet of 4 strands, order 2134, strand 4 is antiparallel to the rest
Superfamily c.84.1: Phosphoglucomutase, first 3 domains [53738] (2 families)
Family c.84.1.0: automated matches [254314] (1 protein)
not a true family
Protein automated matches [254721] (4 species)
not a true protein

Species:

Clupea harengus [TaxId:7950] [397942] (2 PDB entries)
1. Domains for 6y8y:
  1. Domain d6y8ya1: 6y8y A:2-195 [397943]
    Other proteins in same PDB: d6y8ya4, d6y8ya5
    automated match to d3pmga1
    complexed with act, ca, g1p, gol, na, ni, sep
  2. Domain d6y8ya2: 6y8y A:196-308 [397944]
    Other proteins in same PDB: d6y8ya4, d6y8ya5
    automated match to d3pmga2
    complexed with act, ca, g1p, gol, na, ni, sep
  3. Domain d6y8ya3: 6y8y A:309-425 [397945]
    Other proteins in same PDB: d6y8ya4, d6y8ya5
    automated match to d3pmga3
    complexed with act, ca, g1p, gol, na, ni, sep
2. Domains for 6y8z:
  1. Domain d6y8za1: 6y8z A:2-195 [397996]
    Other proteins in same PDB: d6y8za4, d6y8za5
    automated match to d3pmga1
    complexed with act, ca, gol, na, ni, sep
  2. Domain d6y8za2: 6y8z A:196-308 [397997]
    Other proteins in same PDB: d6y8za4, d6y8za5
    automated match to d3pmga2
    complexed with act, ca, gol, na, ni, sep
  3. Domain d6y8za3: 6y8z A:309-425 [397998]
    Other proteins in same PDB: d6y8za4, d6y8za5
    automated match to d3pmga3
    complexed with act, ca, gol, na, ni, sep
Human (Homo sapiens) [TaxId:9606] [316254] (14 PDB entries)
1. Domains for 5epc:
  1. Domain d5epca1: 5epc A:1-191 [316624]
    Other proteins in same PDB: d5epca4, d5epca5, d5epcb4, d5epcb5
    automated match to d5f9ca1
    complexed with gol, mg, so4
  2. Domain d5epca2: 5epc A:192-304 [316625]
    Other proteins in same PDB: d5epca4, d5epca5, d5epcb4, d5epcb5
    automated match to d5f9ca2
    complexed with gol, mg, so4
  3. Domain d5epca3: 5epc A:305-421 [316626]
    Other proteins in same PDB: d5epca4, d5epca5, d5epcb4, d5epcb5
    automated match to d5f9ca3
    complexed with gol, mg, so4
  4. Domain d5epcb1: 5epc B:1-191 [316629]
    Other proteins in same PDB: d5epca4, d5epca5, d5epcb4, d5epcb5
    automated match to d5f9ca1
    complexed with gol, mg, so4
  5. Domain d5epcb2: 5epc B:192-304 [316630]
    Other proteins in same PDB: d5epca4, d5epca5, d5epcb4, d5epcb5
    automated match to d5f9ca2
    complexed with gol, mg, so4
  6. Domain d5epcb3: 5epc B:305-421 [316631]
    Other proteins in same PDB: d5epca4, d5epca5, d5epcb4, d5epcb5
    automated match to d5f9ca3
    complexed with gol, mg, so4
2. Domains for 5f9c:
  1. Domain d5f9ca1: 5f9c A:1-191 [316270]
    Other proteins in same PDB: d5f9ca4, d5f9cb4
    automated match to d3pmga1
    complexed with gol, mg, so4; mutant
  2. Domain d5f9ca2: 5f9c A:192-304 [316271]
    Other proteins in same PDB: d5f9ca4, d5f9cb4
    automated match to d3pmga2
    complexed with gol, mg, so4; mutant
  3. Domain d5f9ca3: 5f9c A:305-421 [316272]
    Other proteins in same PDB: d5f9ca4, d5f9cb4
    automated match to d3pmga3
    complexed with gol, mg, so4; mutant
  4. Domain d5f9cb1: 5f9c B:2-191 [316380]
    Other proteins in same PDB: d5f9ca4, d5f9cb4
    automated match to d3pmga1
    complexed with gol, mg, so4; mutant
  5. Domain d5f9cb2: 5f9c B:192-304 [316381]
    Other proteins in same PDB: d5f9ca4, d5f9cb4
    automated match to d3pmga2
    complexed with gol, mg, so4; mutant
  6. Domain d5f9cb3: 5f9c B:305-421 [316382]
    Other proteins in same PDB: d5f9ca4, d5f9cb4
    automated match to d3pmga3
    complexed with gol, mg, so4; mutant
3. Domains for 5hsh:
  1. Domain d5hsha1: 5hsh A:1-191 [316404]
    Other proteins in same PDB: d5hsha4, d5hshb4
    automated match to d3pmga1
    complexed with so4; mutant
  2. Domain d5hsha2: 5hsh A:192-304 [316405]
    Other proteins in same PDB: d5hsha4, d5hshb4
    automated match to d3pmga2
    complexed with so4; mutant
  3. Domain d5hsha3: 5hsh A:305-421 [316406]
    Other proteins in same PDB: d5hsha4, d5hshb4
    automated match to d3pmga3
    complexed with so4; mutant
  4. Domain d5hshb1: 5hsh B:1-191 [316297]
    Other proteins in same PDB: d5hsha4, d5hshb4
    automated match to d3pmga1
    complexed with so4; mutant
  5. Domain d5hshb2: 5hsh B:192-304 [316298]
    Other proteins in same PDB: d5hsha4, d5hshb4
    automated match to d3pmga2
    complexed with so4; mutant
  6. Domain d5hshb3: 5hsh B:305-421 [316299]
    Other proteins in same PDB: d5hsha4, d5hshb4
    automated match to d3pmga3
    complexed with so4; mutant
4. Domains for 5jn5:
  1. Domain d5jn5a1: 5jn5 A:1-191 [329490]
    Other proteins in same PDB: d5jn5a4, d5jn5a5, d5jn5b4
    automated match to d5hshb1
    complexed with ca, so4
  2. Domain d5jn5a2: 5jn5 A:192-304 [329491]
    Other proteins in same PDB: d5jn5a4, d5jn5a5, d5jn5b4
    automated match to d5f9ca2
    complexed with ca, so4
  3. Domain d5jn5a3: 5jn5 A:305-421 [329492]
    Other proteins in same PDB: d5jn5a4, d5jn5a5, d5jn5b4
    automated match to d5f9ca3
    complexed with ca, so4
  4. Domain d5jn5b1: 5jn5 B:2-191 [329447]
    Other proteins in same PDB: d5jn5a4, d5jn5a5, d5jn5b4
    automated match to d5hshb1
    complexed with ca, so4
  5. Domain d5jn5b2: 5jn5 B:192-304 [329448]
    Other proteins in same PDB: d5jn5a4, d5jn5a5, d5jn5b4
    automated match to d5f9ca2
    complexed with ca, so4
  6. Domain d5jn5b3: 5jn5 B:305-421 [329449]
    Other proteins in same PDB: d5jn5a4, d5jn5a5, d5jn5b4
    automated match to d5f9ca3
    complexed with ca, so4
5. Domains for 5tr2:
  1. Domain d5tr2a1: 5tr2 A:1-191 [329663]
    Other proteins in same PDB: d5tr2a4, d5tr2a5, d5tr2b4
    automated match to d5hshb1
    complexed with ca, gol, so4
  2. Domain d5tr2a2: 5tr2 A:192-304 [329664]
    Other proteins in same PDB: d5tr2a4, d5tr2a5, d5tr2b4
    automated match to d5f9ca2
    complexed with ca, gol, so4
  3. Domain d5tr2a3: 5tr2 A:305-421 [329665]
    Other proteins in same PDB: d5tr2a4, d5tr2a5, d5tr2b4
    automated match to d5f9ca3
    complexed with ca, gol, so4
  4. Domain d5tr2b1: 5tr2 B:2-191 [329558]
    Other proteins in same PDB: d5tr2a4, d5tr2a5, d5tr2b4
    automated match to d5hshb1
    complexed with ca, gol, so4
  5. Domain d5tr2b2: 5tr2 B:192-304 [329559]
    Other proteins in same PDB: d5tr2a4, d5tr2a5, d5tr2b4
    automated match to d5f9ca2
    complexed with ca, gol, so4
  6. Domain d5tr2b3: 5tr2 B:305-421 [329560]
    Other proteins in same PDB: d5tr2a4, d5tr2a5, d5tr2b4
    automated match to d5f9ca3
    complexed with ca, gol, so4
6. Domains for 5vbi:
  1. Domain d5vbia1: 5vbi A:1-191 [353764]
    Other proteins in same PDB: d5vbia4, d5vbia5, d5vbib4
    automated match to d5jn5a1
    complexed with gol, mg, so4
  2. Domain d5vbia2: 5vbi A:192-304 [353765]
    Other proteins in same PDB: d5vbia4, d5vbia5, d5vbib4
    automated match to d5epca2
    complexed with gol, mg, so4
  3. Domain d5vbia3: 5vbi A:305-421 [353766]
    Other proteins in same PDB: d5vbia4, d5vbia5, d5vbib4
    automated match to d5jn5a3
    complexed with gol, mg, so4
  4. Domain d5vbib1: 5vbi B:1-191 [353745]
    Other proteins in same PDB: d5vbia4, d5vbia5, d5vbib4
    automated match to d5jn5a1
    complexed with gol, mg, so4
  5. Domain d5vbib2: 5vbi B:192-304 [353746]
    Other proteins in same PDB: d5vbia4, d5vbia5, d5vbib4
    automated match to d5epca2
    complexed with gol, mg, so4
  6. Domain d5vbib3: 5vbi B:305-421 [353747]
    Other proteins in same PDB: d5vbia4, d5vbia5, d5vbib4
    automated match to d5jn5a3
    complexed with gol, mg, so4
7. Domains for 5vec:
  1. Domain d5veca1: 5vec A:1-191 [354135]
    Other proteins in same PDB: d5veca4, d5veca5, d5vecb4, d5vecb5
    automated match to d5jn5a1
    complexed with gol, mg, so4
  2. Domain d5veca2: 5vec A:192-304 [354136]
    Other proteins in same PDB: d5veca4, d5veca5, d5vecb4, d5vecb5
    automated match to d5epca2
    complexed with gol, mg, so4
  3. Domain d5veca3: 5vec A:305-421 [354137]
    Other proteins in same PDB: d5veca4, d5veca5, d5vecb4, d5vecb5
    automated match to d5jn5a3
    complexed with gol, mg, so4
  4. Domain d5vecb1: 5vec B:1-191 [353977]
    Other proteins in same PDB: d5veca4, d5veca5, d5vecb4, d5vecb5
    automated match to d5jn5a1
    complexed with gol, mg, so4
  5. Domain d5vecb2: 5vec B:192-304 [353978]
    Other proteins in same PDB: d5veca4, d5veca5, d5vecb4, d5vecb5
    automated match to d5epca2
    complexed with gol, mg, so4
  6. Domain d5vecb3: 5vec B:305-421 [353979]
    Other proteins in same PDB: d5veca4, d5veca5, d5vecb4, d5vecb5
    automated match to d5jn5a3
    complexed with gol, mg, so4
8. Domains for 5vg7:
  1. Domain d5vg7a1: 5vg7 A:1-191 [353815]
    Other proteins in same PDB: d5vg7a4, d5vg7a5, d5vg7b4, d5vg7b5
    automated match to d5jn5a1
    complexed with gol, mg, so4
  2. Domain d5vg7a2: 5vg7 A:192-304 [353816]
    Other proteins in same PDB: d5vg7a4, d5vg7a5, d5vg7b4, d5vg7b5
    automated match to d5epca2
    complexed with gol, mg, so4
  3. Domain d5vg7a3: 5vg7 A:305-421 [353817]
    Other proteins in same PDB: d5vg7a4, d5vg7a5, d5vg7b4, d5vg7b5
    automated match to d5jn5a3
    complexed with gol, mg, so4
  4. Domain d5vg7b1: 5vg7 B:1-191 [353729]
    Other proteins in same PDB: d5vg7a4, d5vg7a5, d5vg7b4, d5vg7b5
    automated match to d5jn5a1
    complexed with gol, mg, so4
  5. Domain d5vg7b2: 5vg7 B:192-304 [353730]
    Other proteins in same PDB: d5vg7a4, d5vg7a5, d5vg7b4, d5vg7b5
    automated match to d5epca2
    complexed with gol, mg, so4
  6. Domain d5vg7b3: 5vg7 B:305-421 [353731]
    Other proteins in same PDB: d5vg7a4, d5vg7a5, d5vg7b4, d5vg7b5
    automated match to d5jn5a3
    complexed with gol, mg, so4
9. Domains for 5vin:
  1. Domain d5vina1: 5vin A:1-191 [354008]
    Other proteins in same PDB: d5vina4, d5vina5, d5vinb4
    automated match to d5jn5a1
    complexed with co, gol, so4
  2. Domain d5vina2: 5vin A:192-304 [354009]
    Other proteins in same PDB: d5vina4, d5vina5, d5vinb4
    automated match to d5epca2
    complexed with co, gol, so4
  3. Domain d5vina3: 5vin A:305-421 [354010]
    Other proteins in same PDB: d5vina4, d5vina5, d5vinb4
    automated match to d5jn5a3
    complexed with co, gol, so4
  4. Domain d5vinb1: 5vin B:1-191 [354014]
    Other proteins in same PDB: d5vina4, d5vina5, d5vinb4
    automated match to d5jn5a1
    complexed with co, gol, so4
  5. Domain d5vinb2: 5vin B:192-304 [354015]
    Other proteins in same PDB: d5vina4, d5vina5, d5vinb4
    automated match to d5epca2
    complexed with co, gol, so4
  6. Domain d5vinb3: 5vin B:305-421 [354016]
    Other proteins in same PDB: d5vina4, d5vina5, d5vinb4
    automated match to d5jn5a3
    complexed with co, gol, so4
10. Domains for 6sno:
  1. Domain d6snoa1: 6sno A:6-209 [383404]
    Other proteins in same PDB: d6snoa4
    automated match to d5jn5a1
    complexed with g1p, zn
  2. Domain d6snoa2: 6sno A:210-322 [383405]
    Other proteins in same PDB: d6snoa4
    automated match to d5epca2
    complexed with g1p, zn
  3. Domain d6snoa3: 6sno A:323-439 [383406]
    Other proteins in same PDB: d6snoa4
    automated match to d5jn5a3
    complexed with g1p, zn
11. Domains for 6snp:
  1. Domain d6snpa1: 6snp A:5-209 [383446]
    Other proteins in same PDB: d6snpa4
    automated match to d5jn5a1
    complexed with mg
  2. Domain d6snpa2: 6snp A:210-322 [383447]
    Other proteins in same PDB: d6snpa4
    automated match to d5epca2
    complexed with mg
  3. Domain d6snpa3: 6snp A:323-439 [383448]
    Other proteins in same PDB: d6snpa4
    automated match to d5jn5a3
    complexed with mg
12. Domains for 6snq:
  1. Domain d6snqa1: 6snq A:6-209 [383422]
    Other proteins in same PDB: d6snqa4
    automated match to d5jn5a1
    complexed with g6p, zn
  2. Domain d6snqa2: 6snq A:210-322 [383423]
    Other proteins in same PDB: d6snqa4
    automated match to d5epca2
    complexed with g6p, zn
  3. Domain d6snqa3: 6snq A:323-439 [383424]
    Other proteins in same PDB: d6snqa4
    automated match to d5jn5a3
    complexed with g6p, zn
13. Domains for 6uiq:
  1. Domain d6uiqa1: 6uiq A:1-191 [392380]
    Other proteins in same PDB: d6uiqa4, d6uiqa5, d6uiqb4, d6uiqb5
    automated match to d5jn5a1
    complexed with g6p, mg
  2. Domain d6uiqa2: 6uiq A:192-304 [392381]
    Other proteins in same PDB: d6uiqa4, d6uiqa5, d6uiqb4, d6uiqb5
    automated match to d5epca2
    complexed with g6p, mg
  3. Domain d6uiqa3: 6uiq A:305-421 [392382]
    Other proteins in same PDB: d6uiqa4, d6uiqa5, d6uiqb4, d6uiqb5
    automated match to d5jn5a3
    complexed with g6p, mg
  4. Domain d6uiqb1: 6uiq B:1-191 [392323]
    Other proteins in same PDB: d6uiqa4, d6uiqa5, d6uiqb4, d6uiqb5
    automated match to d5jn5a1
    complexed with g6p, mg
  5. Domain d6uiqb2: 6uiq B:192-304 [392324]
    Other proteins in same PDB: d6uiqa4, d6uiqa5, d6uiqb4, d6uiqb5
    automated match to d5epca2
    complexed with g6p, mg
  6. Domain d6uiqb3: 6uiq B:305-421 [392325]
    Other proteins in same PDB: d6uiqa4, d6uiqa5, d6uiqb4, d6uiqb5
    automated match to d5jn5a3
    complexed with g6p, mg
14. Domains for 6uo6:
  1. Domain d6uo6a1: 6uo6 A:1-191 [382011]
    Other proteins in same PDB: d6uo6a4, d6uo6a5, d6uo6b4, d6uo6b5
    automated match to d5jn5a1
    complexed with mg, so4
  2. Domain d6uo6a2: 6uo6 A:192-304 [382012]
    Other proteins in same PDB: d6uo6a4, d6uo6a5, d6uo6b4, d6uo6b5
    automated match to d5epca2
    complexed with mg, so4
  3. Domain d6uo6a3: 6uo6 A:305-421 [382013]
    Other proteins in same PDB: d6uo6a4, d6uo6a5, d6uo6b4, d6uo6b5
    automated match to d5jn5a3
    complexed with mg, so4
  4. Domain d6uo6b1: 6uo6 B:1-191 [382050]
    Other proteins in same PDB: d6uo6a4, d6uo6a5, d6uo6b4, d6uo6b5
    automated match to d5jn5a1
    complexed with mg, so4
  5. Domain d6uo6b2: 6uo6 B:192-304 [382051]
    Other proteins in same PDB: d6uo6a4, d6uo6a5, d6uo6b4, d6uo6b5
    automated match to d5epca2
    complexed with mg, so4
  6. Domain d6uo6b3: 6uo6 B:305-421 [382052]
    Other proteins in same PDB: d6uo6a4, d6uo6a5, d6uo6b4, d6uo6b5
    automated match to d5jn5a3
    complexed with mg, so4
Pseudomonas aeruginosa [TaxId:287] [256063] (1 PDB entry)
- Domains for 3rsm:
  1. Domain d3rsma1: 3rsm A:12-154 [249203]
    Other proteins in same PDB: d3rsma4
    automated match to d1k2yx1
    complexed with po4, zn; mutant
  2. Domain d3rsma2: 3rsm A:155-258 [249204]
    Other proteins in same PDB: d3rsma4
    automated match to d1p5dx2
    complexed with po4, zn; mutant
  3. Domain d3rsma3: 3rsm A:259-367 [249205]
    Other proteins in same PDB: d3rsma4
    automated match to d1p5dx3
    complexed with po4, zn; mutant
Pseudomonas aeruginosa, PA01 [TaxId:208964] [256304] (2 PDB entries)
1. Domains for 4il8:
  1. Domain d4il8a1: 4il8 A:5-154 [252640]
    Other proteins in same PDB: d4il8a4
    automated match to d1k2yx1
    complexed with gol, mg; mutant
  2. Domain d4il8a2: 4il8 A:155-258 [252641]
    Other proteins in same PDB: d4il8a4
    automated match to d1p5dx2
    complexed with gol, mg; mutant
  3. Domain d4il8a3: 4il8 A:259-367 [252642]
    Other proteins in same PDB: d4il8a4
    automated match to d1p5dx3
    complexed with gol, mg; mutant
2. Domains for 4mrq:
  1. Domain d4mrqa1: 4mrq A:9-154 [253827]
    Other proteins in same PDB: d4mrqa4
    automated match to d1k2yx1
    complexed with edo, peg, pge, tla, zn
  2. Domain d4mrqa2: 4mrq A:155-258 [253828]
    Other proteins in same PDB: d4mrqa4
    automated match to d1p5dx2
    complexed with edo, peg, pge, tla, zn
  3. Domain d4mrqa3: 4mrq A:259-367 [253829]
    Other proteins in same PDB: d4mrqa4
    automated match to d1p5dx3
    complexed with edo, peg, pge, tla, zn

More info for Protein automated matches from c.84.1.0: automated matches

Timeline for Protein automated matches from c.84.1.0: automated matches:

Protein automated matches from c.84.1.0: automated matches first appeared in SCOPe 2.04
Protein automated matches from c.84.1.0: automated matches appears in SCOPe 2.07