Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1755446Fold b.1: Immunoglobulin-like beta-sandwich [48725] (31 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1771626Superfamily b.1.30: Zn aminopeptidase insert domain [254133] (2 families) (S)
    same topology as (b.1.15.1)
  5. 1771646Family b.1.30.0: automated matches [254306] (1 protein)
    not a true family
  6. 1771647Protein automated matches [254707] (3 species)
    not a true protein

Species:

  1. 1771648Human (Homo sapiens) [TaxId:9606] [255965] (11 PDB entries)
    1. Domains for 3mdj:
      1. 1771653Domain d3mdja3: 3mdj A:530-614 [247646]
        Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja4, d3mdjb1, d3mdjb2, d3mdjb4, d3mdjc1, d3mdjc2, d3mdjc4
        automated match to d2yd0a3
        complexed with bes, nag, zn
      2. 1771654Domain d3mdjb3: 3mdj B:530-614 [247650]
        Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja4, d3mdjb1, d3mdjb2, d3mdjb4, d3mdjc1, d3mdjc2, d3mdjc4
        automated match to d2yd0a3
        complexed with bes, nag, zn
      3. 1771655Domain d3mdjc3: 3mdj C:530-614 [247654]
        Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja4, d3mdjb1, d3mdjb2, d3mdjb4, d3mdjc1, d3mdjc2, d3mdjc4
        automated match to d2yd0a3
        complexed with bes, nag, zn
    2. Domains for 3qnf:
      1. 1771656Domain d3qnfa3: 3qnf A:530-614 [248933]
        Other proteins in same PDB: d3qnfa1, d3qnfa2, d3qnfb1, d3qnfb2, d3qnfb4, d3qnfc1, d3qnfc2, d3qnfc4
        automated match to d2yd0a3
        complexed with nag, zn
      2. 1771657Domain d3qnfb3: 3qnf B:530-614 [248936]
        Other proteins in same PDB: d3qnfa1, d3qnfa2, d3qnfb1, d3qnfb2, d3qnfb4, d3qnfc1, d3qnfc2, d3qnfc4
        automated match to d2yd0a3
        complexed with nag, zn
      3. 1771658Domain d3qnfc3: 3qnf C:530-614 [248940]
        Other proteins in same PDB: d3qnfa1, d3qnfa2, d3qnfb1, d3qnfb2, d3qnfb4, d3qnfc1, d3qnfc2, d3qnfc4
        automated match to d2yd0a3
        complexed with nag, zn
    3. Domain for 3rjo:
    4. Domains for 3se6:
      1. 1771659Domain d3se6a3: 3se6 A:547-637 [249387]
        Other proteins in same PDB: d3se6a1, d3se6a2, d3se6a4, d3se6b1, d3se6b2, d3se6b4
        automated match to d2yd0a3
        complexed with lys, mes, nag, zn
      2. 1771660Domain d3se6b3: 3se6 B:547-637 [249391]
        Other proteins in same PDB: d3se6a1, d3se6a2, d3se6a4, d3se6b1, d3se6b2, d3se6b4
        automated match to d2yd0a3
        complexed with lys, mes, nag, zn
    5. Domain for 4fyq:
    6. Domain for 4fyr:
    7. Domain for 4fyt:
    8. Domains for 4jbs:
      1. 1771663Domain d4jbsa3: 4jbs A:547-637 [252874]
        Other proteins in same PDB: d4jbsa1, d4jbsa2, d4jbsa4, d4jbsb1, d4jbsb2, d4jbsb4
        automated match to d2yd0a3
        complexed with imd, nag, p52, zn
      2. 1771664Domain d4jbsb3: 4jbs B:547-637 [252878]
        Other proteins in same PDB: d4jbsa1, d4jbsa2, d4jbsa4, d4jbsb1, d4jbsb2, d4jbsb4
        automated match to d2yd0a3
        complexed with imd, nag, p52, zn
    9. Domains for 4p8q:
      1. 1771665Domain d4p8qa3: 4p8q A:616-706 [261383]
        Other proteins in same PDB: d4p8qa1, d4p8qa2, d4p8qa4, d4p8qb1, d4p8qb2, d4p8qb4
        automated match to d3se6b3
        complexed with nag, unl, zn
      2. 1771666Domain d4p8qb3: 4p8q B:616-706 [263458]
        Other proteins in same PDB: d4p8qa1, d4p8qa2, d4p8qa4, d4p8qb1, d4p8qb2, d4p8qb4
        automated match to d4p8qa3
        complexed with nag, unl, zn
    10. Domains for 4pj6:
      1. 1771661Domain d4pj6a3: 4pj6 A:616-706 [267176]
        Other proteins in same PDB: d4pj6a1, d4pj6a2, d4pj6a4, d4pj6b1, d4pj6b2, d4pj6b4
        automated match to d4p8qa3
        complexed with lys, nag, zn
      2. 1771662Domain d4pj6b3: 4pj6 B:616-706 [267180]
        Other proteins in same PDB: d4pj6a1, d4pj6a2, d4pj6a4, d4pj6b1, d4pj6b2, d4pj6b4
        automated match to d4p8qa3
        complexed with lys, nag, zn
    11. Domains for 5cu5:
      1. 1771667Domain d5cu5a3: 5cu5 A:547-637 [277108]
        Other proteins in same PDB: d5cu5a1, d5cu5a2, d5cu5a4, d5cu5b1, d5cu5b2, d5cu5b4
        automated match to d3se6a3
        complexed with man, nag
      2. 1771668Domain d5cu5b3: 5cu5 B:547-637 [277112]
        Other proteins in same PDB: d5cu5a1, d5cu5a2, d5cu5a4, d5cu5b1, d5cu5b2, d5cu5b4
        automated match to d3se6a3
        complexed with man, nag
  2. 1771669Neisseria meningitidis [TaxId:122586] [259503] (1 PDB entry)
  3. 1771671Thermoplasma acidophilum [TaxId:273075] [256034] (1 PDB entry)

More info for Protein automated matches from b.1.30.0: automated matches

Timeline for Protein automated matches from b.1.30.0: automated matches: