SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.52: Restriction endonuclease-like [52979] (4 superfamilies)
core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
Superfamily c.52.3: Eukaryotic RPB5 N-terminal domain [53036] (1 family)
Family c.52.3.1: Eukaryotic RPB5 N-terminal domain [53037] (2 proteins)
Protein automated matches [254701] (3 species)
not a true protein

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255951] (3 PDB entries)

Domain for 3m3y:

Domain d3m3ye1: 3m3y E:2-143 [247590]
Other proteins in same PDB: d3m3ya_, d3m3yb_, d3m3ye2, d3m3yf_, d3m3yh_, d3m3yi1, d3m3yi2, d3m3yj_, d3m3yk_, d3m3yl_
automated match to d1dzfa1
protein/DNA complex; protein/RNA complex; complexed with c7p, mg, zn

Domain for 3s1m:

Domain d3s1me1: 3s1m E:2-143 [249265]
Other proteins in same PDB: d3s1ma_, d3s1mb_, d3s1me2, d3s1mf_, d3s1mh_, d3s1mi1, d3s1mi2, d3s1mj_, d3s1mk_, d3s1ml_
automated match to d1dzfa1
protein/DNA complex; protein/RNA complex; complexed with mg, zn

Domain for 3s1n:

Domain d3s1ne1: 3s1n E:2-143 [249276]
Other proteins in same PDB: d3s1na_, d3s1nb_, d3s1ne2, d3s1nf_, d3s1nh_, d3s1ni1, d3s1ni2, d3s1nj_, d3s1nk_, d3s1nl_
automated match to d1dzfa1
protein/DNA complex; protein/RNA complex; complexed with mg, zn

Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [256068] (1 PDB entry)

Domain for 3rzo:

Domain d3rzoe1: 3rzo E:2-143 [249246]
Other proteins in same PDB: d3rzoa_, d3rzob_, d3rzoe2, d3rzof_, d3rzoh_, d3rzoi1, d3rzoi2, d3rzoj_, d3rzok_, d3rzol_
automated match to d1dzfa1
protein/DNA complex; protein/RNA complex; complexed with zn

Saccharomyces cerevisiae [TaxId:764097] [256221] (1 PDB entry)

Domain for 4c3i:

Domain d4c3ie1: 4c3i E:1-143 [251332]
Other proteins in same PDB: d4c3ia_, d4c3ib_, d4c3ie2, d4c3if_, d4c3ig1, d4c3ih_, d4c3ii1, d4c3ii2, d4c3ij_, d4c3ik_, d4c3il_, d4c3im_, d4c3in_
automated match to d1dzfa1
complexed with mg, mpd, so4, zn

More info for Protein automated matches from c.52.3.1: Eukaryotic RPB5 N-terminal domain

Timeline for Protein automated matches from c.52.3.1: Eukaryotic RPB5 N-terminal domain:

Protein automated matches from c.52.3.1: Eukaryotic RPB5 N-terminal domain first appeared in SCOPe 2.04
Protein automated matches from c.52.3.1: Eukaryotic RPB5 N-terminal domain appears in SCOPe 2.07