Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2472772Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2472773Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2473216Family c.36.1.10: TK-like PP module [88760] (3 proteins)
    different order of the modules, PP module is N-terminal, Pyr module is next to it followed by a Rossmann-like domain
  6. 2473267Protein automated matches [254698] (2 species)
    not a true protein

Species:

  1. 2473268Escherichia coli [TaxId:83333] [324638] (4 PDB entries)
    1. Domains for 5hht:
      1. 2473275Domain d5hhta1: 5hht A:2-332 [324668]
        Other proteins in same PDB: d5hhta2, d5hhta3, d5hhtb2, d5hhtb3, d5hhtb4
        automated match to d1qgda2
        complexed with ca, edo, tdp
      2. 2473276Domain d5hhtb1: 5hht B:2-332 [324639]
        Other proteins in same PDB: d5hhta2, d5hhta3, d5hhtb2, d5hhtb3, d5hhtb4
        automated match to d1qgda2
        complexed with ca, edo, tdp
    2. Domains for 6rjc:
      1. 2473273Domain d6rjca1: 6rjc A:2-332 [374029]
        Other proteins in same PDB: d6rjca2, d6rjca3, d6rjca4, d6rjcb2, d6rjcb3, d6rjcb4
        automated match to d1qgda2
        complexed with ca, edo, gol, na
      2. 2473274Domain d6rjcb1: 6rjc B:2-332 [374035]
        Other proteins in same PDB: d6rjca2, d6rjca3, d6rjca4, d6rjcb2, d6rjcb3, d6rjcb4
        automated match to d1qgda2
        complexed with ca, edo, gol, na
    3. Domains for 6tj8:
      1. 2473269Domain d6tj8a1: 6tj8 A:2-332 [389160]
        Other proteins in same PDB: d6tj8a2, d6tj8a3, d6tj8a4, d6tj8b2, d6tj8b3, d6tj8b4
        automated match to d1qgda2
        complexed with ca, edo, ndq
      2. 2473270Domain d6tj8b1: 6tj8 B:2-332 [389046]
        Other proteins in same PDB: d6tj8a2, d6tj8a3, d6tj8a4, d6tj8b2, d6tj8b3, d6tj8b4
        automated match to d1qgda2
        complexed with ca, edo, ndq
    4. Domains for 6tj9:
      1. 2473271Domain d6tj9a1: 6tj9 A:2-332 [389147]
        Other proteins in same PDB: d6tj9a2, d6tj9a3, d6tj9a4, d6tj9b2, d6tj9b3, d6tj9b4
        automated match to d1qgda2
        complexed with 5sp, ca, edo, na, ndq
      2. 2473272Domain d6tj9b1: 6tj9 B:2-332 [389123]
        Other proteins in same PDB: d6tj9a2, d6tj9a3, d6tj9a4, d6tj9b2, d6tj9b3, d6tj9b4
        automated match to d1qgda2
        complexed with 5sp, ca, edo, na, ndq
  2. 2473277Escherichia coli [TaxId:83334] [255937] (3 PDB entries)
    1. Domains for 3lpl:
      1. 2473282Domain d3lpla1: 3lpl A:56-470 [247486]
        Other proteins in same PDB: d3lpla2, d3lpla3, d3lplb2, d3lplb3
        automated match to d2ieaa2
        complexed with epe, mg, po4, tdp; mutant
      2. 2473283Domain d3lplb1: 3lpl B:56-470 [247489]
        Other proteins in same PDB: d3lpla2, d3lpla3, d3lplb2, d3lplb3
        automated match to d2ieaa2
        complexed with epe, mg, po4, tdp; mutant
    2. Domains for 3lq2:
      1. 2473278Domain d3lq2a1: 3lq2 A:56-470 [247496]
        Other proteins in same PDB: d3lq2a2, d3lq2a3, d3lq2b2, d3lq2b3
        automated match to d2ieaa2
        complexed with epe, mg, po4, tdp; mutant
      2. 2473279Domain d3lq2b1: 3lq2 B:56-470 [247499]
        Other proteins in same PDB: d3lq2a2, d3lq2a3, d3lq2b2, d3lq2b3
        automated match to d2ieaa2
        complexed with epe, mg, po4, tdp; mutant
    3. Domains for 3lq4:
      1. 2473280Domain d3lq4a1: 3lq4 A:56-470 [247502]
        Other proteins in same PDB: d3lq4a2, d3lq4a3, d3lq4b2, d3lq4b3
        automated match to d2ieaa2
        complexed with epe, mg, po4, tdp; mutant
      2. 2473281Domain d3lq4b1: 3lq4 B:56-470 [247505]
        Other proteins in same PDB: d3lq4a2, d3lq4a3, d3lq4b2, d3lq4b3
        automated match to d2ieaa2
        complexed with epe, mg, po4, tdp; mutant

More info for Protein automated matches from c.36.1.10: TK-like PP module

Timeline for Protein automated matches from c.36.1.10: TK-like PP module: