Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2108258Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2108259Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2108664Family c.36.1.10: TK-like PP module [88760] (3 protein domains)
    different order of the modules, PP module is N-terminal, Pyr module is next to it followed by a Rossmann-like domain
  6. 2108715Protein automated matches [254698] (2 species)
    not a true protein

Species:

  1. 2108716Escherichia coli [TaxId:83334] [255937] (3 PDB entries)
    1. Domains for 3lpl:
      1. 2108721Domain d3lpla1: 3lpl A:56-470 [247486]
        Other proteins in same PDB: d3lpla2, d3lpla3, d3lplb2, d3lplb3
        automated match to d2ieaa2
        complexed with epe, mg, po4, tdp; mutant
      2. 2108722Domain d3lplb1: 3lpl B:56-470 [247489]
        Other proteins in same PDB: d3lpla2, d3lpla3, d3lplb2, d3lplb3
        automated match to d2ieaa2
        complexed with epe, mg, po4, tdp; mutant
    2. Domains for 3lq2:
      1. 2108717Domain d3lq2a1: 3lq2 A:56-470 [247496]
        Other proteins in same PDB: d3lq2a2, d3lq2a3, d3lq2b2, d3lq2b3
        automated match to d2ieaa2
        complexed with epe, mg, po4, tdp; mutant
      2. 2108718Domain d3lq2b1: 3lq2 B:56-470 [247499]
        Other proteins in same PDB: d3lq2a2, d3lq2a3, d3lq2b2, d3lq2b3
        automated match to d2ieaa2
        complexed with epe, mg, po4, tdp; mutant
    3. Domains for 3lq4:
      1. 2108719Domain d3lq4a1: 3lq4 A:56-470 [247502]
        Other proteins in same PDB: d3lq4a2, d3lq4a3, d3lq4b2, d3lq4b3
        automated match to d2ieaa2
        complexed with epe, mg, po4, tdp; mutant
      2. 2108720Domain d3lq4b1: 3lq4 B:56-470 [247505]
        Other proteins in same PDB: d3lq4a2, d3lq4a3, d3lq4b2, d3lq4b3
        automated match to d2ieaa2
        complexed with epe, mg, po4, tdp; mutant
  2. 2281337Escherichia coli [TaxId:83333] [324638] (1 PDB entry)

More info for Protein automated matches from c.36.1.10: TK-like PP module

Timeline for Protein automated matches from c.36.1.10: TK-like PP module: