Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2931196Fold d.15: beta-Grasp (ubiquitin-like) [54235] (15 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2935190Superfamily d.15.13: Nqo1 middle domain-like [142984] (2 families) (S)
    possibly evolved from 2Fe-2S ferredoxins; contains no iron-sulfur cluster
  5. 2935198Family d.15.13.0: automated matches [254297] (1 protein)
    not a true family
  6. 2935199Protein automated matches [254683] (5 species)
    not a true protein

Species:

  1. 2935200Mouse (Mus musculus) [TaxId:10090] [394204] (4 PDB entries)
    1. Domain for 6zr2:
    2. Domain for 6ztq:
    3. Domain for 7ak5:
    4. Domain for 7b93:
  2. 2935205Sheep (Ovis aries) [TaxId:9940] [420085] (15 PDB entries)
    1. Domain for 6zk9:
    2. Domain for 6zkc:
    3. Domain for 6zkd:
    4. Domain for 6zke:
    5. Domain for 6zkf:
    6. Domain for 6zkh:
    7. Domain for 6zki:
    8. Domain for 6zkj:
    9. Domain for 6zkl:
    10. Domain for 6zkm:
    11. Domain for 6zkn:
    12. Domain for 6zks:
    13. Domain for 6zkt:
    14. Domain for 6zku:
    15. Domain for 6zkv:
  3. 2935221Thermus thermophilus HB8 [TaxId:300852] [255881] (3 PDB entries)
    1. Domains for 3i9v:
      1. 2935224Domain d3i9v12: 3i9v 1:250-333 [246752]
        Other proteins in same PDB: d3i9v11, d3i9v13, d3i9v2_, d3i9v31, d3i9v32, d3i9v33, d3i9v34, d3i9v4_, d3i9v5_, d3i9v6_, d3i9v7_, d3i9v9_, d3i9va1, d3i9va3, d3i9vb_, d3i9vc1, d3i9vc2, d3i9vc3, d3i9vc4, d3i9vd_, d3i9ve_, d3i9vf_, d3i9vg_, d3i9vh_
        automated match to d2fug13
        complexed with ca, fes, fmn, mn, sf4
      2. 2935225Domain d3i9va2: 3i9v A:250-333 [246765]
        Other proteins in same PDB: d3i9v11, d3i9v13, d3i9v2_, d3i9v31, d3i9v32, d3i9v33, d3i9v34, d3i9v4_, d3i9v5_, d3i9v6_, d3i9v7_, d3i9v9_, d3i9va1, d3i9va3, d3i9vb_, d3i9vc1, d3i9vc2, d3i9vc3, d3i9vc4, d3i9vd_, d3i9ve_, d3i9vf_, d3i9vg_, d3i9vh_
        automated match to d2fug13
        complexed with ca, fes, fmn, mn, sf4
    2. Domains for 3iam:
      1. 2935222Domain d3iam12: 3iam 1:250-333 [246778]
        Other proteins in same PDB: d3iam11, d3iam13, d3iam2_, d3iam31, d3iam32, d3iam33, d3iam34, d3iam4_, d3iam5_, d3iam6_, d3iam7_, d3iam9_, d3iama1, d3iama3, d3iamb_, d3iamc1, d3iamc2, d3iamc3, d3iamc4, d3iamd_, d3iame_, d3iamf_, d3iamg_, d3iamh_
        automated match to d2fug13
        complexed with ca, fes, fmn, mg, nai, sf4
      2. 2935223Domain d3iama2: 3iam A:250-333 [246791]
        Other proteins in same PDB: d3iam11, d3iam13, d3iam2_, d3iam31, d3iam32, d3iam33, d3iam34, d3iam4_, d3iam5_, d3iam6_, d3iam7_, d3iam9_, d3iama1, d3iama3, d3iamb_, d3iamc1, d3iamc2, d3iamc3, d3iamc4, d3iamd_, d3iame_, d3iamf_, d3iamg_, d3iamh_
        automated match to d2fug13
        complexed with ca, fes, fmn, mg, nai, sf4
    3. Domains for 3ias:
      1. 2935226Domain d3ias12: 3ias 1:250-333 [246844]
        Other proteins in same PDB: d3ias11, d3ias13, d3ias2_, d3ias31, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa3, d3iasb_, d3iasc1, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj3, d3iask_, d3iasl1, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass3, d3iast_, d3iasu1, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug13
        complexed with ca, fes, fmn, sf4
      2. 2935227Domain d3iasa2: 3ias A:250-333 [246857]
        Other proteins in same PDB: d3ias11, d3ias13, d3ias2_, d3ias31, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa3, d3iasb_, d3iasc1, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj3, d3iask_, d3iasl1, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass3, d3iast_, d3iasu1, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug13
        complexed with ca, fes, fmn, sf4
      3. 2935228Domain d3iasj2: 3ias J:250-333 [246870]
        Other proteins in same PDB: d3ias11, d3ias13, d3ias2_, d3ias31, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa3, d3iasb_, d3iasc1, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj3, d3iask_, d3iasl1, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass3, d3iast_, d3iasu1, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug13
        complexed with ca, fes, fmn, sf4
      4. 2935229Domain d3iass2: 3ias S:250-333 [246883]
        Other proteins in same PDB: d3ias11, d3ias13, d3ias2_, d3ias31, d3ias32, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa3, d3iasb_, d3iasc1, d3iasc2, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj3, d3iask_, d3iasl1, d3iasl2, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass3, d3iast_, d3iasu1, d3iasu2, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug13
        complexed with ca, fes, fmn, sf4
  4. 2935230Thermus thermophilus [TaxId:274] [393512] (1 PDB entry)
  5. 3086124Sus scrofa [TaxId:9823] [422441] (3 PDB entries)
    1. Domain for 7v30:
    2. Domain for 7vwj:
    3. Domain for 7vz1:

More info for Protein automated matches from d.15.13.0: automated matches

Timeline for Protein automated matches from d.15.13.0: automated matches: