SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

Fold d.134: Nitrite and sulphite reductase 4Fe-4S domain-like [56013] (1 superfamily)
beta-alpha-beta-alpha-beta(3)-alpha(2,3); mixed sheet: order 12345; left-handed crossover connection between strands 1 and 2

Superfamily d.134.1: Nitrite and sulphite reductase 4Fe-4S domain-like [56014] (2 families)
duplication: contains two domains of this fold
Family d.134.1.0: automated matches [254284] (1 protein)
not a true family
Protein automated matches [254663] (3 species)
not a true protein

Species:

Escherichia coli K-12 [TaxId:83333] [256263] (3 PDB entries)
1. Domains for 4g38:
  1. Domain d4g38a2: 4g38 A:146-345 [252134]
    Other proteins in same PDB: d4g38a1, d4g38a3
    automated match to d1aopa3
    complexed with k, po4, sf4, srm; mutant
  2. Domain d4g38a4: 4g38 A:426-570 [252136]
    Other proteins in same PDB: d4g38a1, d4g38a3
    automated match to d1aopa4
    complexed with k, po4, sf4, srm; mutant
2. Domains for 4g39:
  1. Domain d4g39a2: 4g39 A:146-345 [252138]
    Other proteins in same PDB: d4g39a1, d4g39a3
    automated match to d1aopa3
    complexed with k, po4, sf4, srm; mutant
  2. Domain d4g39a4: 4g39 A:426-570 [252140]
    Other proteins in same PDB: d4g39a1, d4g39a3
    automated match to d1aopa4
    complexed with k, po4, sf4, srm; mutant
3. Domains for 4htr:
  1. Domain d4htra2: 4htr A:151-345 [252503]
    Other proteins in same PDB: d4htra1, d4htra3
    automated match to d1aopa3
    complexed with na, sf4, so3, srm
  2. Domain d4htra4: 4htr A:426-570 [252505]
    Other proteins in same PDB: d4htra1, d4htra3
    automated match to d1aopa4
    complexed with na, sf4, so3, srm
Escherichia coli [TaxId:83333] [353430] (4 PDB entries)
1. Domains for 6c3m:
  1. Domain d6c3ma2: 6c3m A:146-345 [353468]
    Other proteins in same PDB: d6c3ma1, d6c3ma3
    automated match to d1aopa3
    complexed with k, po4, sf4, srm
  2. Domain d6c3ma4: 6c3m A:426-570 [353470]
    Other proteins in same PDB: d6c3ma1, d6c3ma3
    automated match to d1aopa4
    complexed with k, po4, sf4, srm
2. Domains for 6c3x:
  1. Domain d6c3xa2: 6c3x A:146-345 [353487]
    Other proteins in same PDB: d6c3xa1, d6c3xa3
    automated match to d1aopa3
    complexed with k, po4, sf4, srm
  2. Domain d6c3xa4: 6c3x A:426-570 [353489]
    Other proteins in same PDB: d6c3xa1, d6c3xa3
    automated match to d1aopa4
    complexed with k, po4, sf4, srm
3. Domains for 6c3y:
  1. Domain d6c3ya2: 6c3y A:146-345 [353535]
    Other proteins in same PDB: d6c3ya1, d6c3ya3
    automated match to d1aopa3
    complexed with k, po4, sf4, srm
  2. Domain d6c3ya4: 6c3y A:426-570 [353537]
    Other proteins in same PDB: d6c3ya1, d6c3ya3
    automated match to d1aopa4
    complexed with k, po4, sf4, srm
4. Domains for 6c3z:
  1. Domain d6c3za2: 6c3z A:149-345 [353431]
    Other proteins in same PDB: d6c3za1, d6c3za3
    automated match to d1aopa3
    complexed with k, po4, sf4, srm
  2. Domain d6c3za4: 6c3z A:426-570 [353434]
    Other proteins in same PDB: d6c3za1, d6c3za3
    automated match to d1aopa4
    complexed with k, po4, sf4, srm
Tobacco (Nicotiana tabacum) [TaxId:4097] [255758] (16 PDB entries)
1. Domains for 3b0g:
  1. Domain d3b0ga2: 3b0g A:175-345 [245324]
    Other proteins in same PDB: d3b0ga1, d3b0ga3
    automated match to d2akja4
    complexed with cl, k, sf4, srm
  2. Domain d3b0ga4: 3b0g A:430-555 [245326]
    Other proteins in same PDB: d3b0ga1, d3b0ga3
    automated match to d2akja3
    complexed with cl, k, sf4, srm
2. Domains for 3b0h:
  1. Domain d3b0ha2: 3b0h A:175-345 [245328]
    Other proteins in same PDB: d3b0ha1, d3b0ha3, d3b0hb1, d3b0hb3
    automated match to d2akja4
    complexed with cl, k, sf4, srm
  2. Domain d3b0ha4: 3b0h A:431-555 [245330]
    Other proteins in same PDB: d3b0ha1, d3b0ha3, d3b0hb1, d3b0hb3
    automated match to d2akja3
    complexed with cl, k, sf4, srm
  3. Domain d3b0hb2: 3b0h B:175-345 [245332]
    Other proteins in same PDB: d3b0ha1, d3b0ha3, d3b0hb1, d3b0hb3
    automated match to d2akja4
    complexed with cl, k, sf4, srm
  4. Domain d3b0hb4: 3b0h B:431-555 [245334]
    Other proteins in same PDB: d3b0ha1, d3b0ha3, d3b0hb1, d3b0hb3
    automated match to d2akja3
    complexed with cl, k, sf4, srm
3. Domains for 3b0j:
  1. Domain d3b0ja2: 3b0j A:175-345 [245336]
    Other proteins in same PDB: d3b0ja1, d3b0ja3
    automated match to d2akja4
    complexed with cl, k, sf4, srm; mutant
  2. Domain d3b0ja4: 3b0j A:430-555 [245338]
    Other proteins in same PDB: d3b0ja1, d3b0ja3
    automated match to d2akja3
    complexed with cl, k, sf4, srm; mutant
4. Domains for 3b0l:
  1. Domain d3b0la2: 3b0l A:175-345 [245340]
    Other proteins in same PDB: d3b0la1, d3b0la3
    automated match to d2akja4
    complexed with cl, k, sf4, srm; mutant
  2. Domain d3b0la4: 3b0l A:430-555 [245342]
    Other proteins in same PDB: d3b0la1, d3b0la3
    automated match to d2akja3
    complexed with cl, k, sf4, srm; mutant
5. Domains for 3b0m:
  1. Domain d3b0ma2: 3b0m A:175-345 [245344]
    Other proteins in same PDB: d3b0ma1, d3b0ma3
    automated match to d2akja4
    complexed with cl, k, sf4, srm; mutant
  2. Domain d3b0ma4: 3b0m A:430-555 [245346]
    Other proteins in same PDB: d3b0ma1, d3b0ma3
    automated match to d2akja3
    complexed with cl, k, sf4, srm; mutant
6. Domains for 3b0n:
  1. Domain d3b0na2: 3b0n A:175-345 [245348]
    Other proteins in same PDB: d3b0na1, d3b0na3
    automated match to d2akja4
    complexed with cl, k, sf4, srm; mutant
  2. Domain d3b0na4: 3b0n A:430-555 [245350]
    Other proteins in same PDB: d3b0na1, d3b0na3
    automated match to d2akja3
    complexed with cl, k, sf4, srm; mutant
7. Domains for 3vkp:
  1. Domain d3vkpa2: 3vkp A:175-345 [250577]
    Other proteins in same PDB: d3vkpa1, d3vkpa3
    automated match to d2akja4
    complexed with cl, k, no2, sf4, srm
  2. Domain d3vkpa4: 3vkp A:430-555 [250579]
    Other proteins in same PDB: d3vkpa1, d3vkpa3
    automated match to d2akja3
    complexed with cl, k, no2, sf4, srm
8. Domains for 3vkq:
  1. Domain d3vkqa2: 3vkq A:175-345 [250581]
    Other proteins in same PDB: d3vkqa1, d3vkqa3
    automated match to d2akja4
    complexed with cl, k, no2, sf4, srm
  2. Domain d3vkqa4: 3vkq A:430-555 [250583]
    Other proteins in same PDB: d3vkqa1, d3vkqa3
    automated match to d2akja3
    complexed with cl, k, no2, sf4, srm
9. Domains for 3vkr:
  1. Domain d3vkra2: 3vkr A:175-345 [250585]
    Other proteins in same PDB: d3vkra1, d3vkra3
    automated match to d2akja4
    complexed with cl, k, no2, sf4, srm
  2. Domain d3vkra4: 3vkr A:430-555 [250587]
    Other proteins in same PDB: d3vkra1, d3vkra3
    automated match to d2akja3
    complexed with cl, k, no2, sf4, srm
10. Domains for 3vks:
  1. Domain d3vksa2: 3vks A:175-345 [250589]
    Other proteins in same PDB: d3vksa1, d3vksa3
    automated match to d2akja4
    complexed with cl, k, no, sf4, srm
  2. Domain d3vksa4: 3vks A:430-555 [250591]
    Other proteins in same PDB: d3vksa1, d3vksa3
    automated match to d2akja3
    complexed with cl, k, no, sf4, srm
11. Domains for 3vkt:
  1. Domain d3vkta2: 3vkt A:175-345 [250593]
    Other proteins in same PDB: d3vkta1, d3vkta3
    automated match to d2akja4
    complexed with cl, hoa, k, sf4, srm
  2. Domain d3vkta4: 3vkt A:430-555 [250595]
    Other proteins in same PDB: d3vkta1, d3vkta3
    automated match to d2akja3
    complexed with cl, hoa, k, sf4, srm
12. Domains for 3vlx:
  1. Domain d3vlxa2: 3vlx A:175-345 [250597]
    Other proteins in same PDB: d3vlxa1, d3vlxa3
    automated match to d2akja4
    complexed with cl, k, sf4, srm; mutant
  2. Domain d3vlxa4: 3vlx A:430-555 [250599]
    Other proteins in same PDB: d3vlxa1, d3vlxa3
    automated match to d2akja3
    complexed with cl, k, sf4, srm; mutant
13. Domains for 3vly:
  1. Domain d3vlya2: 3vly A:175-345 [250601]
    Other proteins in same PDB: d3vlya1, d3vlya3
    automated match to d2akja4
    complexed with cl, k, sf4, so3, srm; mutant
  2. Domain d3vlya4: 3vly A:430-555 [250603]
    Other proteins in same PDB: d3vlya1, d3vlya3
    automated match to d2akja3
    complexed with cl, k, sf4, so3, srm; mutant
14. Domains for 3vlz:
  1. Domain d3vlza2: 3vlz A:175-345 [250605]
    Other proteins in same PDB: d3vlza1, d3vlza3
    automated match to d2akja4
    complexed with cl, k, sf4, so3, srm; mutant
  2. Domain d3vlza4: 3vlz A:430-555 [250607]
    Other proteins in same PDB: d3vlza1, d3vlza3
    automated match to d2akja3
    complexed with cl, k, sf4, so3, srm; mutant
15. Domains for 3vm0:
  1. Domain d3vm0a2: 3vm0 A:175-345 [250609]
    Other proteins in same PDB: d3vm0a1, d3vm0a3
    automated match to d2akja4
    complexed with cl, k, no2, sf4, srm; mutant
  2. Domain d3vm0a4: 3vm0 A:430-555 [250611]
    Other proteins in same PDB: d3vm0a1, d3vm0a3
    automated match to d2akja3
    complexed with cl, k, no2, sf4, srm; mutant
16. Domains for 3vm1:
  1. Domain d3vm1a2: 3vm1 A:175-345 [250613]
    Other proteins in same PDB: d3vm1a1, d3vm1a3
    automated match to d2akja4
    complexed with bct, cl, k, sf4, srm; mutant
  2. Domain d3vm1a4: 3vm1 A:430-555 [250615]
    Other proteins in same PDB: d3vm1a1, d3vm1a3
    automated match to d2akja3
    complexed with bct, cl, k, sf4, srm; mutant

More info for Protein automated matches from d.134.1.0: automated matches

Timeline for Protein automated matches from d.134.1.0: automated matches:

Protein automated matches from d.134.1.0: automated matches first appeared in SCOPe 2.04
Protein automated matches from d.134.1.0: automated matches appears in SCOPe 2.07