Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.96: T-fold [55619] (2 superfamilies)
    beta(2)-alpha(2)-beta(2); 2 layers: alpha/beta; antiparallel sheet 1234
    tunnel-shaped: its known members form wide oligomeric barrels different sizes
  4. Superfamily d.96.1: Tetrahydrobiopterin biosynthesis enzymes-like [55620] (5 families) (S)
    bind purine or pterin in topologically similar sites between subunits
  5. Family d.96.1.4: Urate oxidase (uricase) [55633] (2 proteins)
    automatically mapped to Pfam PF01014
  6. Protein automated matches [254656] (4 species)
    not a true protein

Species:

  1. Arthrobacter globiformis [TaxId:1665] [255720] (5 PDB entries)
    1. Domains for 2yzb:
      1. Domain d2yzba1: 2yzb A:11-141 [153838]
        automated match to d2yzca1
        complexed with urc
      2. Domain d2yzba2: 2yzb A:142-297 [153839]
        automated match to d2yzca2
        complexed with urc
      3. Domain d2yzbb1: 2yzb B:11-141 [153840]
        automated match to d2yzca1
        complexed with urc
      4. Domain d2yzbb2: 2yzb B:142-297 [153841]
        automated match to d2yzca2
        complexed with urc
      5. Domain d2yzbc1: 2yzb C:11-141 [153842]
        automated match to d2yzca1
        complexed with urc
      6. Domain d2yzbc2: 2yzb C:142-297 [153843]
        automated match to d2yzca2
        complexed with urc
      7. Domain d2yzbd1: 2yzb D:11-141 [153844]
        automated match to d2yzca1
        complexed with urc
      8. Domain d2yzbd2: 2yzb D:142-297 [153845]
        automated match to d2yzca2
        complexed with urc
      9. Domain d2yzbe1: 2yzb E:11-141 [153846]
        automated match to d2yzca1
        complexed with urc
      10. Domain d2yzbe2: 2yzb E:142-296 [153847]
        automated match to d2yzca2
        complexed with urc
      11. Domain d2yzbf1: 2yzb F:11-141 [153848]
        automated match to d2yzca1
        complexed with urc
      12. Domain d2yzbf2: 2yzb F:142-297 [153849]
        automated match to d2yzca2
        complexed with urc
      13. Domain d2yzbg1: 2yzb G:11-141 [153850]
        automated match to d2yzca1
        complexed with urc
      14. Domain d2yzbg2: 2yzb G:142-297 [153851]
        automated match to d2yzca2
        complexed with urc
      15. Domain d2yzbh1: 2yzb H:11-141 [153852]
        automated match to d2yzca1
        complexed with urc
      16. Domain d2yzbh2: 2yzb H:142-297 [153853]
        automated match to d2yzca2
        complexed with urc
    2. Domains for 2yzc:
      1. Domain d2yzca1: 2yzc A:11-141 [153854]
        automated match to d2yzca1
        complexed with 1al
      2. Domain d2yzca2: 2yzc A:142-297 [153855]
        automated match to d2yzca2
        complexed with 1al
      3. Domain d2yzcb1: 2yzc B:11-141 [153856]
        automated match to d2yzca1
        complexed with 1al
      4. Domain d2yzcb2: 2yzc B:142-297 [153857]
        automated match to d2yzca2
        complexed with 1al
      5. Domain d2yzcc1: 2yzc C:11-141 [153858]
        automated match to d2yzca1
        complexed with 1al
      6. Domain d2yzcc2: 2yzc C:142-297 [153859]
        automated match to d2yzca2
        complexed with 1al
      7. Domain d2yzcd1: 2yzc D:11-141 [153860]
        automated match to d2yzca1
        complexed with 1al
      8. Domain d2yzcd2: 2yzc D:142-297 [153861]
        automated match to d2yzca2
        complexed with 1al
      9. Domain d2yzce1: 2yzc E:11-141 [153862]
        automated match to d2yzce1
        complexed with 1al
      10. Domain d2yzce2: 2yzc E:142-297 [153863]
        automated match to d2yzce2
        complexed with 1al
      11. Domain d2yzcf1: 2yzc F:11-141 [153864]
        automated match to d2yzce1
        complexed with 1al
      12. Domain d2yzcf2: 2yzc F:142-297 [153865]
        automated match to d2yzce2
        complexed with 1al
      13. Domain d2yzcg1: 2yzc G:11-141 [153866]
        automated match to d2yzce1
        complexed with 1al
      14. Domain d2yzcg2: 2yzc G:142-297 [153867]
        automated match to d2yzce2
        complexed with 1al
      15. Domain d2yzch1: 2yzc H:11-141 [153868]
        automated match to d2yzce1
        complexed with 1al
      16. Domain d2yzch2: 2yzc H:142-297 [153869]
        automated match to d2yzce2
        complexed with 1al
    3. Domains for 2yzd:
      1. Domain d2yzda1: 2yzd A:11-141 [153870]
        automated match to d2yzea1
        complexed with aza
      2. Domain d2yzda2: 2yzd A:142-297 [153871]
        automated match to d2yzea2
        complexed with aza
      3. Domain d2yzdb1: 2yzd B:11-141 [153872]
        automated match to d2yzea1
        complexed with aza
      4. Domain d2yzdb2: 2yzd B:142-297 [153873]
        automated match to d2yzea2
        complexed with aza
      5. Domain d2yzdc1: 2yzd C:11-141 [153874]
        automated match to d2yzea1
        complexed with aza
      6. Domain d2yzdc2: 2yzd C:142-297 [153875]
        automated match to d2yzea2
        complexed with aza
      7. Domain d2yzdd1: 2yzd D:11-141 [153876]
        automated match to d2yzea1
        complexed with aza
      8. Domain d2yzdd2: 2yzd D:142-297 [153877]
        automated match to d2yzea2
        complexed with aza
      9. Domain d2yzde1: 2yzd E:11-141 [153878]
        automated match to d2yzea1
        complexed with aza
      10. Domain d2yzde2: 2yzd E:142-297 [153879]
        automated match to d2yzea2
        complexed with aza
      11. Domain d2yzdf1: 2yzd F:11-141 [153880]
        automated match to d2yzea1
        complexed with aza
      12. Domain d2yzdf2: 2yzd F:142-297 [153881]
        automated match to d2yzea2
        complexed with aza
      13. Domain d2yzdg1: 2yzd G:11-141 [153882]
        automated match to d2yzea1
        complexed with aza
      14. Domain d2yzdg2: 2yzd G:142-297 [153883]
        automated match to d2yzea2
        complexed with aza
      15. Domain d2yzdh1: 2yzd H:11-141 [153884]
        automated match to d2yzea1
        complexed with aza
      16. Domain d2yzdh2: 2yzd H:142-297 [153885]
        automated match to d2yzea2
        complexed with aza
    4. Domains for 2yze:
      1. Domain d2yzea1: 2yze A:11-141 [153886]
        automated match to d2yzea1
        complexed with nob
      2. Domain d2yzea2: 2yze A:142-297 [153887]
        automated match to d2yzea2
        complexed with nob
      3. Domain d2yzeb1: 2yze B:11-141 [153888]
        automated match to d2yzea1
        complexed with nob
      4. Domain d2yzeb2: 2yze B:142-297 [153889]
        automated match to d2yzea2
        complexed with nob
      5. Domain d2yzec1: 2yze C:11-141 [153890]
        automated match to d2yzec1
        complexed with nob
      6. Domain d2yzec2: 2yze C:142-297 [153891]
        automated match to d2yzec2
        complexed with nob
      7. Domain d2yzed1: 2yze D:11-141 [153892]
        automated match to d2yzec1
        complexed with nob
      8. Domain d2yzed2: 2yze D:142-297 [153893]
        automated match to d2yzec2
        complexed with nob
      9. Domain d2yzee1: 2yze E:11-141 [153894]
        automated match to d2yzea1
        complexed with nob
      10. Domain d2yzee2: 2yze E:142-297 [153895]
        automated match to d2yzea2
        complexed with nob
      11. Domain d2yzef1: 2yze F:11-141 [153896]
        automated match to d2yzef1
        complexed with nob
      12. Domain d2yzef2: 2yze F:142-297 [153897]
        automated match to d2yzef2
        complexed with nob
      13. Domain d2yzeg1: 2yze G:11-141 [153898]
        automated match to d2yzec1
        complexed with nob
      14. Domain d2yzeg2: 2yze G:142-297 [153899]
        automated match to d2yzec2
        complexed with nob
      15. Domain d2yzeh1: 2yze H:11-141 [153900]
        automated match to d2yzec1
        complexed with nob
      16. Domain d2yzeh2: 2yze H:142-297 [153901]
        automated match to d2yzec2
        complexed with nob
    5. Domains for 6oe8:
      1. Domain d6oe8a1: 6oe8 A:11-141 [373322]
        automated match to d1vaxa2
        complexed with mli, pg4, pge; mutant
      2. Domain d6oe8a2: 6oe8 A:142-302 [373323]
        automated match to d1vaxa1
        complexed with mli, pg4, pge; mutant
      3. Domain d6oe8b1: 6oe8 B:11-141 [373235]
        automated match to d1vaxa2
        complexed with mli, pg4, pge; mutant
      4. Domain d6oe8b2: 6oe8 B:142-302 [373236]
        automated match to d1vaxa1
        complexed with mli, pg4, pge; mutant
      5. Domain d6oe8c1: 6oe8 C:11-141 [373218]
        automated match to d1vaxa2
        complexed with mli, pg4, pge; mutant
      6. Domain d6oe8c2: 6oe8 C:142-302 [373219]
        automated match to d1vaxa1
        complexed with mli, pg4, pge; mutant
      7. Domain d6oe8d1: 6oe8 D:11-141 [373317]
        automated match to d1vaxa2
        complexed with mli, pg4, pge; mutant
      8. Domain d6oe8d2: 6oe8 D:142-302 [373318]
        automated match to d1vaxa1
        complexed with mli, pg4, pge; mutant
  2. Aspergillus flavus [TaxId:5059] [260668] (5 PDB entries)
    1. Domains for 1uox:
      1. Domain d1uoxa1: 1uox A:1-136 [303158]
        automated match to d4n9sa1
        complexed with aza, fcy
      2. Domain d1uoxa2: 1uox A:137-295 [303159]
        automated match to d4n9sa2
        complexed with aza, fcy
    2. Domains for 4d12:
      1. Domain d4d12a1: 4d12 A:1-136 [260669]
        automated match to d4n9sa1
        complexed with mpd, urc
      2. Domain d4d12a2: 4d12 A:137-301 [260670]
        automated match to d4n9sa2
        complexed with mpd, urc
    3. Domains for 4d13:
      1. Domain d4d13a1: 4d13 A:1-136 [261772]
        automated match to d4n9sa1
        complexed with iup, mpd
      2. Domain d4d13a2: 4d13 A:137-296 [261774]
        automated match to d4n9sa2
        complexed with iup, mpd
    4. Domains for 4d17:
      1. Domain d4d17a1: 4d17 A:1-136 [261776]
        automated match to d4n9sa1
        complexed with iup, mpd, oxy, urc
      2. Domain d4d17a2: 4d17 A:137-296 [261777]
        automated match to d4n9sa2
        complexed with iup, mpd, oxy, urc
    5. Domains for 4d19:
      1. Domain d4d19a1: 4d19 A:1-136 [261773]
        automated match to d4n9sa1
        complexed with iup, mpd, oxy, urc
      2. Domain d4d19a2: 4d19 A:137-296 [261775]
        automated match to d4n9sa2
        complexed with iup, mpd, oxy, urc
  3. Bacillus sp. [TaxId:36824] [312567] (12 PDB entries)
    1. Domains for 5ayj:
      1. Domain d5ayja1: 5ayj A:7-158 [312568]
        automated match to d1j2ga1
        complexed with mua, p6g, so4; mutant
      2. Domain d5ayja2: 5ayj A:159-310 [312569]
        automated match to d1j2ga2
        complexed with mua, p6g, so4; mutant
      3. Domain d5ayjb1: 5ayj B:8-158 [312599]
        automated match to d1j2ga1
        complexed with mua, p6g, so4; mutant
      4. Domain d5ayjb2: 5ayj B:159-314 [312600]
        automated match to d1j2ga2
        complexed with mua, p6g, so4; mutant
      5. Domain d5ayjc1: 5ayj C:8-158 [312580]
        automated match to d1j2ga1
        complexed with mua, p6g, so4; mutant
      6. Domain d5ayjc2: 5ayj C:159-314 [312581]
        automated match to d1j2ga2
        complexed with mua, p6g, so4; mutant
      7. Domain d5ayjd1: 5ayj D:7-158 [312630]
        automated match to d1j2ga1
        complexed with mua, p6g, so4; mutant
      8. Domain d5ayjd2: 5ayj D:159-310 [312631]
        automated match to d1j2ga2
        complexed with mua, p6g, so4; mutant
    2. Domains for 5y2p:
      1. Domain d5y2pa1: 5y2p A:8-158 [355868]
        automated match to d1j2ga1
        complexed with aza, edo, k, oxy, so4
      2. Domain d5y2pa2: 5y2p A:159-310 [355869]
        automated match to d1j2ga2
        complexed with aza, edo, k, oxy, so4
      3. Domain d5y2pb1: 5y2p B:8-158 [355911]
        automated match to d1j2ga1
        complexed with aza, edo, k, oxy, so4
      4. Domain d5y2pb2: 5y2p B:159-311 [355912]
        automated match to d1j2ga2
        complexed with aza, edo, k, oxy, so4
    3. Domains for 5y52:
      1. Domain d5y52a1: 5y52 A:8-158 [355896]
        automated match to d1j2ga1
        complexed with aza, edo, oxy, so4; mutant
      2. Domain d5y52a2: 5y52 A:159-310 [355897]
        automated match to d1j2ga2
        complexed with aza, edo, oxy, so4; mutant
      3. Domain d5y52b1: 5y52 B:8-158 [355852]
        automated match to d1j2ga1
        complexed with aza, edo, oxy, so4; mutant
      4. Domain d5y52b2: 5y52 B:159-310 [355853]
        automated match to d1j2ga2
        complexed with aza, edo, oxy, so4; mutant
      5. Domain d5y52c1: 5y52 C:8-158 [355967]
        automated match to d1j2ga1
        complexed with aza, edo, oxy, so4; mutant
      6. Domain d5y52c2: 5y52 C:159-310 [355968]
        automated match to d1j2ga2
        complexed with aza, edo, oxy, so4; mutant
      7. Domain d5y52d1: 5y52 D:8-158 [355945]
        automated match to d1j2ga1
        complexed with aza, edo, oxy, so4; mutant
      8. Domain d5y52d2: 5y52 D:159-310 [355946]
        automated match to d1j2ga2
        complexed with aza, edo, oxy, so4; mutant
    4. Domains for 5yj2:
      1. Domain d5yj2a1: 5yj2 A:8-158 [358708]
        automated match to d1j2ga1
        complexed with aza, mxe, oxy, so4
      2. Domain d5yj2a2: 5yj2 A:159-310 [358709]
        automated match to d1j2ga2
        complexed with aza, mxe, oxy, so4
      3. Domain d5yj2b1: 5yj2 B:8-158 [358796]
        automated match to d1j2ga1
        complexed with aza, mxe, oxy, so4
      4. Domain d5yj2b2: 5yj2 B:159-310 [358797]
        automated match to d1j2ga2
        complexed with aza, mxe, oxy, so4
      5. Domain d5yj2c1: 5yj2 C:8-158 [358733]
        automated match to d1j2ga1
        complexed with aza, mxe, oxy, so4
      6. Domain d5yj2c2: 5yj2 C:159-310 [358734]
        automated match to d1j2ga2
        complexed with aza, mxe, oxy, so4
      7. Domain d5yj2d1: 5yj2 D:8-158 [358777]
        automated match to d1j2ga1
        complexed with aza, mxe, oxy, so4
      8. Domain d5yj2d2: 5yj2 D:159-310 [358778]
        automated match to d1j2ga2
        complexed with aza, mxe, oxy, so4
    5. Domains for 5yja:
      1. Domain d5yjaa1: 5yja A:8-158 [358773]
        automated match to d1j2ga1
        complexed with aza, k, mxe, oxy, so4; mutant
      2. Domain d5yjaa2: 5yja A:159-310 [358774]
        automated match to d1j2ga2
        complexed with aza, k, mxe, oxy, so4; mutant
      3. Domain d5yjab1: 5yja B:9-158 [358727]
        automated match to d1j2ga1
        complexed with aza, k, mxe, oxy, so4; mutant
      4. Domain d5yjab2: 5yja B:159-313 [358728]
        automated match to d1j2ga2
        complexed with aza, k, mxe, oxy, so4; mutant
      5. Domain d5yjac1: 5yja C:8-158 [358705]
        automated match to d1j2ga1
        complexed with aza, k, mxe, oxy, so4; mutant
      6. Domain d5yjac2: 5yja C:159-314 [358706]
        automated match to d1j2ga2
        complexed with aza, k, mxe, oxy, so4; mutant
      7. Domain d5yjad1: 5yja D:8-158 [358688]
        automated match to d1j2ga1
        complexed with aza, k, mxe, oxy, so4; mutant
      8. Domain d5yjad2: 5yja D:159-310 [358689]
        automated match to d1j2ga2
        complexed with aza, k, mxe, oxy, so4; mutant
    6. Domains for 5z27:
      1. Domain d5z27a1: 5z27 A:8-158 [361943]
        automated match to d1j2ga1
        complexed with aza, edo, k, oxy, so4; mutant
      2. Domain d5z27a2: 5z27 A:159-310 [361944]
        automated match to d1j2ga2
        complexed with aza, edo, k, oxy, so4; mutant
      3. Domain d5z27b1: 5z27 B:8-158 [361932]
        automated match to d1j2ga1
        complexed with aza, edo, k, oxy, so4; mutant
      4. Domain d5z27b2: 5z27 B:159-310 [361933]
        automated match to d1j2ga2
        complexed with aza, edo, k, oxy, so4; mutant
    7. Domains for 5z2b:
      1. Domain d5z2ba1: 5z2b A:8-158 [361954]
        automated match to d1j2ga1
        complexed with aza, cl, edo, oxy, so4; mutant
      2. Domain d5z2ba2: 5z2b A:159-310 [361955]
        automated match to d1j2ga2
        complexed with aza, cl, edo, oxy, so4; mutant
      3. Domain d5z2bb1: 5z2b B:8-158 [361995]
        automated match to d1j2ga1
        complexed with aza, cl, edo, oxy, so4; mutant
      4. Domain d5z2bb2: 5z2b B:159-310 [361996]
        automated match to d1j2ga2
        complexed with aza, cl, edo, oxy, so4; mutant
    8. Domains for 7cmn:
      1. Domain d7cmna1: 7cmn A:8-158 [389990]
        automated match to d1j2ga1
        complexed with aza, edo, oxy, so4
      2. Domain d7cmna2: 7cmn A:159-310 [389992]
        automated match to d1j2ga2
        complexed with aza, edo, oxy, so4
      3. Domain d7cmnb1: 7cmn B:8-158 [389988]
        automated match to d1j2ga1
        complexed with aza, edo, oxy, so4
      4. Domain d7cmnb2: 7cmn B:159-310 [389989]
        automated match to d1j2ga2
        complexed with aza, edo, oxy, so4
    9. Domains for 7cmq:
      1. Domain d7cmqa1: 7cmq A:8-158 [389980]
        automated match to d1j2ga1
        complexed with aza, edo, oxy, so4
      2. Domain d7cmqa2: 7cmq A:159-310 [389981]
        automated match to d1j2ga2
        complexed with aza, edo, oxy, so4
      3. Domain d7cmqb1: 7cmq B:8-158 [389966]
        automated match to d1j2ga1
        complexed with aza, edo, oxy, so4
      4. Domain d7cmqb2: 7cmq B:159-311 [389967]
        automated match to d1j2ga2
        complexed with aza, edo, oxy, so4
    10. Domains for 7cuc:
      1. Domain d7cuca1: 7cuc A:8-158 [394498]
        automated match to d1j2ga1
        complexed with aza, mxe, na, oxy, so4
      2. Domain d7cuca2: 7cuc A:159-310 [394499]
        automated match to d1j2ga2
        complexed with aza, mxe, na, oxy, so4
      3. Domain d7cucb1: 7cuc B:8-158 [394491]
        automated match to d1j2ga1
        complexed with aza, mxe, na, oxy, so4
      4. Domain d7cucb2: 7cuc B:159-310 [394492]
        automated match to d1j2ga2
        complexed with aza, mxe, na, oxy, so4
    11. Domains for 7cuf:
      1. Domain d7cufa1: 7cuf A:8-158 [394513]
        automated match to d1j2ga1
        complexed with aza, mxe, na, oxy, so4
      2. Domain d7cufa2: 7cuf A:159-310 [394514]
        automated match to d1j2ga2
        complexed with aza, mxe, na, oxy, so4
      3. Domain d7cufb1: 7cuf B:8-158 [394535]
        automated match to d1j2ga1
        complexed with aza, mxe, na, oxy, so4
      4. Domain d7cufb2: 7cuf B:159-310 [394536]
        automated match to d1j2ga2
        complexed with aza, mxe, na, oxy, so4
    12. Domains for 7cug:
      1. Domain d7cuga1: 7cug A:8-158 [394462]
        automated match to d1j2ga1
        complexed with aza, mxe, na, oxy, so4
      2. Domain d7cuga2: 7cug A:159-310 [394463]
        automated match to d1j2ga2
        complexed with aza, mxe, na, oxy, so4
      3. Domain d7cugb1: 7cug B:8-158 [394483]
        automated match to d1j2ga1
        complexed with aza, mxe, na, oxy, so4
      4. Domain d7cugb2: 7cug B:159-310 [394484]
        automated match to d1j2ga2
        complexed with aza, mxe, na, oxy, so4
  4. Bacillus tb-90 [TaxId:36824] [280497] (1 PDB entry)

More info for Protein automated matches from d.96.1.4: Urate oxidase (uricase)

Timeline for Protein automated matches from d.96.1.4: Urate oxidase (uricase):