Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class a: All alpha proteins [46456] (290 folds)
  3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. Superfamily a.4.12: TrpR-like [48295] (4 families) (S)
    contains an extra shared helix after the HTH motif
  5. Family a.4.12.1: Trp repressor, TrpR [48296] (2 proteins)
    intertwined dimer of identical 6-helical subunits
    automatically mapped to Pfam PF01371
  6. Protein automated matches [254650] (4 species)
    not a true protein

Species:

  1. Escherichia coli [TaxId:562] [255682] (2 PDB entries)
    1. Domains for 2xdi:
      1. Domain d2xdia_: 2xdi A: [244490]
        automated match to d1co0a_
        mutant
      2. Domain d2xdib_: 2xdi B: [244491]
        automated match to d1co0a_
        mutant
    2. Domain for 6f7g:
  2. Escherichia coli [TaxId:585055] [364391] (1 PDB entry)
  3. Escherichia coli [TaxId:83333] [363102] (4 PDB entries)
    1. Domains for 6ekp:
      1. Domain d6ekpa_: 6ekp A: [363128]
        automated match to d5tm0a_
        complexed with iac, p3g
      2. Domain d6ekpb_: 6ekp B: [363103]
        automated match to d5tm0a_
        complexed with iac, p3g
    2. Domain for 6f9k:
    3. Domain for 6st6:
    4. Domain for 6st7:
  4. Escherichia coli [TaxId:83334] [340663] (7 PDB entries)
    1. Domains for 5tm0:
      1. Domain d5tm0a_: 5tm0 A: [340717]
        automated match to d1co0a_
      2. Domain d5tm0b_: 5tm0 B: [340678]
        automated match to d1co0a_
      3. Domain d5tm0c_: 5tm0 C: [340690]
        automated match to d1co0a_
      4. Domain d5tm0d_: 5tm0 D: [340664]
        automated match to d1co0a_
    2. Domains for 6ejw:
      1. Domain d6ejwa_: 6ejw A: [364414]
        automated match to d5tm0a_
        complexed with iac
      2. Domain d6ejwb_: 6ejw B: [364394]
        automated match to d5tm0a_
        complexed with iac
      3. Domain d6ejwc_: 6ejw C: [364427]
        automated match to d5tm0a_
        complexed with iac
      4. Domain d6ejwd_: 6ejw D: [364428]
        automated match to d5tm0a_
        complexed with iac
    3. Domains for 6eni:
      1. Domain d6enia_: 6eni A: [364401]
        automated match to d5tm0a_
        complexed with edo, iac
      2. Domain d6enib_: 6eni B: [364403]
        automated match to d5tm0a_
        complexed with edo, iac
    4. Domains for 6enn:
      1. Domain d6enna_: 6enn A: [364462]
        automated match to d5tm0a_
        complexed with iac
      2. Domain d6ennb_: 6enn B: [364411]
        automated match to d5tm0a_
        complexed with iac
    5. Domains for 6f7f:
      1. Domain d6f7fa_: 6f7f A: [366764]
        automated match to d5tm0a_
        complexed with iop
      2. Domain d6f7fb_: 6f7f B: [366789]
        automated match to d5tm0a_
        complexed with iop
      3. Domain d6f7fc_: 6f7f C: [366783]
        automated match to d5tm0a_
        complexed with iop
      4. Domain d6f7fd_: 6f7f D: [366801]
        automated match to d5tm0a_
        complexed with iop
    6. Domain for 6f7g:
    7. Domains for 6fal:
      1. Domain d6fala_: 6fal A: [363147]
        Other proteins in same PDB: d6falb2
        automated match to d5tm0a_
        complexed with iop
      2. Domain d6falb1: 6fal B:13-108 [363131]
        Other proteins in same PDB: d6falb2
        automated match to d5tm0a_
        complexed with iop

More info for Protein automated matches from a.4.12.1: Trp repressor, TrpR

Timeline for Protein automated matches from a.4.12.1: Trp repressor, TrpR: