Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1968223Class h: Coiled coil proteins [57942] (7 folds)
  3. 1969577Fold h.3: Stalk segment of viral fusion proteins [58063] (3 superfamilies)
    core: trimeric coiled coil
  4. 1969578Superfamily h.3.1: Influenza hemagglutinin (stalk) [58064] (2 families) (S)
  5. 1970237Family h.3.1.0: automated matches [254278] (1 protein)
    not a true family
  6. 1970238Protein automated matches [254645] (10 species)
    not a true protein

Species:

  1. 1970239Influenza a virus (a/canine/colorado/17864/2006(h3n8)) [TaxId:867285] [258565] (4 PDB entries)
    1. Domain for 4uo6:
    2. Domains for 4uo7:
      1. 1970243Domain d4uo7b_: 4uo7 B: [267447]
        Other proteins in same PDB: d4uo7a_, d4uo7c_, d4uo7e_
        automated match to d4uo4b_
        complexed with nag, so4
      2. 1970244Domain d4uo7d_: 4uo7 D: [267449]
        Other proteins in same PDB: d4uo7a_, d4uo7c_, d4uo7e_
        automated match to d4uo4b_
        complexed with nag, so4
      3. 1970245Domain d4uo7f_: 4uo7 F: [267451]
        Other proteins in same PDB: d4uo7a_, d4uo7c_, d4uo7e_
        automated match to d4uo4b_
        complexed with nag, so4
    3. Domain for 4uo8:
    4. Domain for 4uoa:
  2. 1970246Influenza a virus (a/chicken/guangdong/s1311/2010(h6n6)) [TaxId:1454272] [278011] (1 PDB entry)
  3. 1970250Influenza a virus (a/chicken/potsdam/4705/1984(h2n2)) [TaxId:139280] [255661] (1 PDB entry)
  4. 1970260Influenza a virus (a/japan/305+/1957(h2n2)) [TaxId:382813] [255659] (2 PDB entries)
    1. Domains for 2wrd:
      1. 1970264Domain d2wrda2: 2wrd A:330-493 [244233]
        Other proteins in same PDB: d2wrda1, d2wrdb1, d2wrdc1
        automated match to d1ha0a2
      2. 1970265Domain d2wrdb2: 2wrd B:330-494 [244235]
        Other proteins in same PDB: d2wrda1, d2wrdb1, d2wrdc1
        automated match to d1ha0a2
      3. 1970266Domain d2wrdc2: 2wrd C:330-493 [244237]
        Other proteins in same PDB: d2wrda1, d2wrdb1, d2wrdc1
        automated match to d1ha0a2
    2. Domains for 2wre:
      1. 1970261Domain d2wrea2: 2wre A:330-493 [244239]
        Other proteins in same PDB: d2wrea1, d2wreb1, d2wrec1
        automated match to d1ha0a2
      2. 1970262Domain d2wreb2: 2wre B:330-494 [244241]
        Other proteins in same PDB: d2wrea1, d2wreb1, d2wrec1
        automated match to d1ha0a2
      3. 1970263Domain d2wrec2: 2wre C:330-493 [244243]
        Other proteins in same PDB: d2wrea1, d2wreb1, d2wrec1
        automated match to d1ha0a2
  5. 1970267Influenza A virus [TaxId:11320] [255657] (7 PDB entries)
    1. Domains for 2wrb:
      1. 1970276Domain d2wrba2: 2wrb A:330-487 [244227]
        Other proteins in same PDB: d2wrba1, d2wrbb1, d2wrbc1
        automated match to d1ha0a2
        complexed with sia
      2. 1970277Domain d2wrbb2: 2wrb B:330-495 [244229]
        Other proteins in same PDB: d2wrba1, d2wrbb1, d2wrbc1
        automated match to d1ha0a2
        complexed with sia
      3. 1970278Domain d2wrbc2: 2wrb C:330-462 [244231]
        Other proteins in same PDB: d2wrba1, d2wrbb1, d2wrbc1
        automated match to d1ha0a2
        complexed with sia
    2. Domain for 4mc5:
    3. Domain for 4uo4:
    4. Domain for 4uo5:
    5. Domains for 4wsw:
      1. 1970273Domain d4wswb_: 4wsw B: [269518]
        Other proteins in same PDB: d4wswa_, d4wswc_, d4wswe_
        automated match to d4uo4b_
        complexed with nag
      2. 1970274Domain d4wswd_: 4wsw D: [269527]
        Other proteins in same PDB: d4wswa_, d4wswc_, d4wswe_
        automated match to d4uo4b_
        complexed with nag
      3. 1970275Domain d4wswf_: 4wsw F: [269529]
        Other proteins in same PDB: d4wswa_, d4wswc_, d4wswe_
        automated match to d4uo4b_
        complexed with nag
    6. Domains for 4xq5:
      1. 1970271Domain d4xq5b_: 4xq5 B: [271091]
        Other proteins in same PDB: d4xq5a_, d4xq5c_, d4xq5e_
        automated match to d4uo4b_
        complexed with nag
      2. 1970272Domain d4xq5f_: 4xq5 F: [271097]
        Other proteins in same PDB: d4xq5a_, d4xq5c_, d4xq5e_
        automated match to d4uo4b_
        complexed with nag
    7. Domains for 4xqo:
      1. 1970279Domain d4xqob_: 4xqo B: [271096]
        Other proteins in same PDB: d4xqoa_, d4xqoc_, d4xqoe_
        automated match to d4uo4b_
        complexed with gal, nag, sia
      2. 1970280Domain d4xqod_: 4xqo D: [271099]
        Other proteins in same PDB: d4xqoa_, d4xqoc_, d4xqoe_
        automated match to d4uo4b_
        complexed with gal, nag, sia
      3. 1970281Domain d4xqof_: 4xqo F: [271102]
        Other proteins in same PDB: d4xqoa_, d4xqoc_, d4xqoe_
        automated match to d4uo4b_
        complexed with gal, nag, sia
  6. 1970282Influenza a virus [TaxId:1454272] [275804] (1 PDB entry)
  7. 1970286Influenza a virus [TaxId:1454274] [275816] (1 PDB entry)
  8. 1970290Influenza a virus [TaxId:1458555] [271089] (1 PDB entry)
  9. 1970292Influenza a virus [TaxId:867285] [258563] (1 PDB entry)
  10. 1970295Influenza virus a/anhui/1/2013 (h7n9) [TaxId:11320] [256214] (6 PDB entries)
    1. Domain for 4bsa:
    2. Domain for 4bsb:
    3. Domain for 4bsc:
    4. Domain for 4bsd:
    5. Domain for 4bse:
    6. Domain for 4bsf:

More info for Protein automated matches from h.3.1.0: automated matches

Timeline for Protein automated matches from h.3.1.0: automated matches: