SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.72: Ribokinase-like [53612] (3 superfamilies)
core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
potential superfamily: members of this fold have similar functions but different ATP-binding sites

Superfamily c.72.2: MurD-like peptide ligases, catalytic domain [53623] (3 families)
has extra strand located between strands 1 and 2
Family c.72.2.1: MurCDEF [53624] (5 proteins)
automatically mapped to Pfam PF08245
Protein automated matches [254549] (3 species)
not a true protein

Species:

Escherichia coli [TaxId:562] [255258] (8 PDB entries)
1. Domain for 2jff:
  - Domain d2jffa3: 2jff A:94-297 [138305]
    Other proteins in same PDB: d2jffa1, d2jffa2, d2jffa4
    automated match to d2jfga3
    complexed with lk2, so4
2. Domain for 2jfg:
  - Domain d2jfga3: 2jfg A:94-297 [138308]
    Other proteins in same PDB: d2jfga1, d2jfga2, d2jfga4
    automated match to d2jfga3
    complexed with adp, so4, uma
3. Domain for 2jfh:
  - Domain d2jfha3: 2jfh A:94-297 [138311]
    Other proteins in same PDB: d2jfha1, d2jfha2, d2jfha4
    automated match to d2jfga3
    complexed with lk1, so4
4. Domain for 2uuo:
  - Domain d2uuoa3: 2uuo A:94-297 [152199]
    Other proteins in same PDB: d2uuoa1, d2uuoa2, d2uuoa4
    automated match to d4uaga3
    complexed with lk3, so4
5. Domain for 2uup:
  - Domain d2uupa3: 2uup A:94-297 [152202]
    Other proteins in same PDB: d2uupa1, d2uupa2, d2uupa4
    automated match to d4uaga3
    complexed with lk4, so4
6. Domain for 2vtd:
  - Domain d2vtda2: 2vtd A:94-297 [243940]
    Other proteins in same PDB: d2vtda1, d2vtda3, d2vtda4
    automated match to d4uaga3
    complexed with lkm, so4
7. Domain for 2vte:
  - Domain d2vtea2: 2vte A:94-297 [243943]
    Other proteins in same PDB: d2vtea1, d2vtea3, d2vtea4
    automated match to d4uaga3
    complexed with ik4, so4
8. Domain for 2xpc:
  - Domain d2xpca2: 2xpc A:94-297 [244566]
    Other proteins in same PDB: d2xpca1, d2xpca3, d2xpca4
    automated match to d4uaga3
    complexed with 051, cl, dms, so4
Escherichia coli [TaxId:668369] [255650] (2 PDB entries)
1. Domain for 2wjp:
  - Domain d2wjpa2: 2wjp A:94-297 [244148]
    Other proteins in same PDB: d2wjpa1, d2wjpa3, d2wjpa4
    automated match to d4uaga3
    complexed with azi, cl, d17, dms, so4
2. Domain for 2x5o:
  - Domain d2x5oa2: 2x5o A:94-297 [244426]
    Other proteins in same PDB: d2x5oa1, d2x5oa3, d2x5oa4
    automated match to d4uaga3
    complexed with azi, cl, so3, so4, vsv
Escherichia coli [TaxId:83333] [316489] (1 PDB entry)
- Domain for 5a5f:
  - Domain d5a5fa2: 5a5f A:94-297 [316490]
    Other proteins in same PDB: d5a5fa1, d5a5fa3, d5a5fa4
    automated match to d4uaga3
    complexed with adp, mli, uma

More info for Protein automated matches from c.72.2.1: MurCDEF

Timeline for Protein automated matches from c.72.2.1: MurCDEF:

Protein automated matches from c.72.2.1: MurCDEF first appeared in SCOPe 2.04
Protein automated matches from c.72.2.1: MurCDEF appears in SCOPe 2.05
Protein automated matches from c.72.2.1: MurCDEF appears in SCOPe 2.07
Protein automated matches from c.72.2.1: MurCDEF appears in the current release, SCOPe 2.08