Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2070014Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2070786Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
  5. 2071201Family b.82.2.15: proly-4-hydroxylase (P4H, PHD) like [254173] (3 protein domains)
    Pfam PF13640; PubMed 16782814
  6. 2071209Protein automated matches [254532] (2 species)
    not a true protein

Species:

  1. 2071210Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [255264] (2 PDB entries)
    1. Domains for 2jij:
      1. 2071214Domain d2jija1: 2jij A:29-251 [242225]
        Other proteins in same PDB: d2jija2, d2jijb2, d2jijc2
        automated match to d2jiga_
        complexed with cl
      2. 2071215Domain d2jijb1: 2jij B:29-250 [242226]
        Other proteins in same PDB: d2jija2, d2jijb2, d2jijc2
        automated match to d2jiga_
        complexed with cl
      3. 2071216Domain d2jijc1: 2jij C:29-249 [242227]
        Other proteins in same PDB: d2jija2, d2jijb2, d2jijc2
        automated match to d2jiga_
        complexed with cl
    2. Domains for 2v4a:
      1. 2071211Domain d2v4aa1: 2v4a A:29-249 [243838]
        Other proteins in same PDB: d2v4aa2, d2v4ac2, d2v4ad2
        automated match to d2jiga_
        complexed with cl, dms, gol, so4
      2. 2071212Domain d2v4ac1: 2v4a C:29-249 [243839]
        Other proteins in same PDB: d2v4aa2, d2v4ac2, d2v4ad2
        automated match to d2jiga_
        complexed with cl, dms, gol, so4
      3. 2071213Domain d2v4ad1: 2v4a D:29-249 [243840]
        Other proteins in same PDB: d2v4aa2, d2v4ac2, d2v4ad2
        automated match to d2jiga_
        complexed with cl, dms, gol, so4
  2. 2071217Human (Homo sapiens) [TaxId:9606] [255179] (25 PDB entries)
    1. Domain for 2g1m:
    2. Domain for 2hbt:
    3. Domain for 2hbu:
    4. Domain for 2y33:
    5. Domain for 2y34:
    6. Domain for 3ouh:
    7. Domain for 3oui:
    8. Domain for 3ouj:
    9. Domain for 4bqw:
    10. Domain for 4bqx:
    11. Domain for 4bqy:
    12. Domain for 4jzr:
    13. Domain for 4kbz:
    14. Domain for 4uwd:
    15. Domain for 5l9r:
      • 2278686Domain d5l9ra_: 5l9r A: [321987]
        automated match to d3ouja_
        protein/DNA complex; complexed with gol, mn, oga, pg4, so4
    16. Domain for 5lat:
      • 2278807Domain d5lata_: 5lat A: [322108]
        automated match to d3ouja_
        protein/DNA complex; complexed with bct, gol, mn, un9
    17. Domain for 5lb6:
      • 2278778Domain d5lb6a_: 5lb6 A: [322079]
        automated match to d3ouja_
        protein/DNA complex; complexed with gol, mn, so4, un9
    18. Domain for 5lbb:
    19. Domain for 5lbc:
      • 2278687Domain d5lbca_: 5lbc A: [321988]
        automated match to d3ouja_
        protein/DNA complex; complexed with bct, cl, gol, mn, so4, un9
    20. Domain for 5lbe:
    21. Domain for 5lbf:
      • 2278718Domain d5lbfa_: 5lbf A: [322019]
        automated match to d3ouja_
        protein/DNA complex; complexed with bct, mn, so4, un9
    22. Domain for 5ox5:
    23. Domain for 5ox6:
      • 2296984Domain d5ox6a_: 5ox6 A: [340285]
        automated match to d3ouja_
        protein/DNA complex; complexed with a1z, gol, mn, so4
    24. Domain for 5v18:
    25. Domain for 5v1b:

More info for Protein automated matches from b.82.2.15: proly-4-hydroxylase (P4H, PHD) like

Timeline for Protein automated matches from b.82.2.15: proly-4-hydroxylase (P4H, PHD) like: