Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2426781Fold b.84: Barrel-sandwich hybrid [51229] (5 superfamilies)
    sandwich of half-barrel shaped beta-sheets
  4. 2426884Superfamily b.84.2: Rudiment single hybrid motif [51246] (3 families) (S)
  5. 2427009Family b.84.2.0: automated matches [254217] (1 protein)
    not a true family
  6. 2427010Protein automated matches [254496] (16 species)
    not a true protein

Species:

  1. 2427011Aquifex aeolicus [TaxId:63363] [255714] (2 PDB entries)
    1. Domains for 2yw2:
      1. 2427012Domain d2yw2a3: 2yw2 A:323-423 [244838]
        Other proteins in same PDB: d2yw2a1, d2yw2a2, d2yw2b1, d2yw2b2
        automated match to d1gsoa1
        complexed with atp, po4
      2. 2427013Domain d2yw2b3: 2yw2 B:323-423 [244841]
        Other proteins in same PDB: d2yw2a1, d2yw2a2, d2yw2b1, d2yw2b2
        automated match to d1gsoa1
        complexed with atp, po4
    2. Domains for 2yya:
      1. 2427014Domain d2yyaa3: 2yya A:323-423 [244884]
        Other proteins in same PDB: d2yyaa1, d2yyaa2, d2yyab1, d2yyab2
        automated match to d1gsoa1
      2. 2427015Domain d2yyab3: 2yya B:323-423 [244887]
        Other proteins in same PDB: d2yyaa1, d2yyaa2, d2yyab1, d2yyab2
        automated match to d1gsoa1
  2. 2427016Campylobacter jejuni [TaxId:192222] [256008] (2 PDB entries)
    1. Domains for 3ouu:
      1. 2427017Domain d3ouua3: 3ouu A:330-443 [248342]
        Other proteins in same PDB: d3ouua1, d3ouua2, d3ouua4, d3ouub1, d3ouub2
        automated match to d1ulza1
        complexed with anp, ca, cac, fmt, gol
      2. 2427018Domain d3ouub3: 3ouu B:330-443 [248345]
        Other proteins in same PDB: d3ouua1, d3ouua2, d3ouua4, d3ouub1, d3ouub2
        automated match to d1ulza1
        complexed with anp, ca, cac, fmt, gol
    2. Domains for 3ouz:
      1. 2427019Domain d3ouza3: 3ouz A:330-443 [248348]
        Other proteins in same PDB: d3ouza1, d3ouza2, d3ouza4, d3ouzb1, d3ouzb2
        automated match to d1ulza1
        complexed with adp, fmt, gol, mg, mlt, srt, tla
      2. 2427020Domain d3ouzb3: 3ouz B:330-443 [248351]
        Other proteins in same PDB: d3ouza1, d3ouza2, d3ouza4, d3ouzb1, d3ouzb2
        automated match to d1ulza1
        complexed with adp, fmt, gol, mg, mlt, srt, tla
  3. 2427021Ehrlichia chaffeensis [TaxId:205920] [255936] (1 PDB entry)
  4. 2427023Escherichia coli K-12 [TaxId:83333] [255843] (2 PDB entries)
    1. Domains for 3g8c:
      1. 2427026Domain d3g8ca3: 3g8c A:331-444 [246262]
        Other proteins in same PDB: d3g8ca1, d3g8ca2, d3g8cb1, d3g8cb2
        automated match to d2w70a3
        complexed with adp, bct, btn, mg
      2. 2427027Domain d3g8cb3: 3g8c B:331-444 [246265]
        Other proteins in same PDB: d3g8ca1, d3g8ca2, d3g8cb1, d3g8cb2
        automated match to d2w70a3
        complexed with adp, bct, btn, mg
    2. Domains for 3g8d:
      1. 2427024Domain d3g8da2: 3g8d A:331-444 [246267]
        Other proteins in same PDB: d3g8da1, d3g8db1, d3g8db2
        automated match to d2w70a3
        complexed with adp, mg, so4; mutant
      2. 2427025Domain d3g8db3: 3g8d B:331-444 [246270]
        Other proteins in same PDB: d3g8da1, d3g8db1, d3g8db2
        automated match to d2w70a3
        complexed with adp, mg, so4; mutant
  5. 2427028Escherichia coli [TaxId:696406] [372364] (1 PDB entry)
  6. 2427031Geobacillus kaustophilus [TaxId:1462] [255711] (4 PDB entries)
    1. Domain for 2yrw:
    2. Domain for 2yrx:
    3. Domain for 2ys6:
    4. Domain for 2ys7:
  7. 2427036Geobacillus thermodenitrificans [TaxId:33940] [255127] (1 PDB entry)
  8. 2427039Haemophilus influenzae [TaxId:71421] [268355] (10 PDB entries)
    1. Domain for 4mv1:
    2. Domain for 4mv3:
    3. Domain for 4mv4:
    4. Domain for 4mv6:
    5. Domain for 4mv7:
    6. Domain for 4mv8:
    7. Domain for 4mv9:
    8. Domain for 4rzq:
    9. Domain for 6oi8:
    10. Domain for 6ojh:
  9. 2427050Human (Homo sapiens) [TaxId:9606] [255567] (1 PDB entry)
  10. 2427053Hydrogenobacter thermophilus [TaxId:940] [399169] (3 PDB entries)
    1. Domains for 7kbl:
      1. 2427058Domain d7kbla3: 7kbl A:329-450 [399174]
        Other proteins in same PDB: d7kbla1, d7kbla2, d7kbla4, d7kblb1, d7kblb2
        automated match to d1ulza1
        complexed with bct
      2. 2427059Domain d7kblb3: 7kbl B:329-451 [399216]
        Other proteins in same PDB: d7kbla1, d7kbla2, d7kbla4, d7kblb1, d7kblb2
        automated match to d1ulza1
        complexed with bct
    2. Domains for 7kc7:
      1. 2427056Domain d7kc7a3: 7kc7 A:329-451 [399184]
        Other proteins in same PDB: d7kc7a1, d7kc7a2, d7kc7b1, d7kc7b2
        automated match to d1ulza1
        complexed with adp, po4
      2. 2427057Domain d7kc7b3: 7kc7 B:329-451 [399271]
        Other proteins in same PDB: d7kc7a1, d7kc7a2, d7kc7b1, d7kc7b2
        automated match to d1ulza1
        complexed with adp, po4
    3. Domains for 7kct:
      1. 2427054Domain d7kcta3: 7kct A:329-451 [399180]
        Other proteins in same PDB: d7kcta1, d7kcta2, d7kcta4, d7kctb1, d7kctb2, d7kctb4
        automated match to d1ulza1
        complexed with adp, bct, mg
      2. 2427055Domain d7kctb3: 7kct B:329-451 [399170]
        Other proteins in same PDB: d7kcta1, d7kcta2, d7kcta4, d7kctb1, d7kctb2, d7kctb4
        automated match to d1ulza1
        complexed with adp, bct, mg
  11. 2427060Mycobacterium tuberculosis [TaxId:83332] [330750] (1 PDB entry)
  12. 2427063Neisseria gonorrhoeae [TaxId:521006] [333087] (1 PDB entry)
  13. 2427066Pseudomonas aeruginosa [TaxId:287] [255074] (2 PDB entries)
    1. Domains for 2c00:
      1. 2427067Domain d2c00a3: 2c00 A:331-445 [241399]
        Other proteins in same PDB: d2c00a1, d2c00a2, d2c00b1, d2c00b2
        automated match to d2w70a3
        complexed with so4
      2. 2427068Domain d2c00b3: 2c00 B:331-445 [241402]
        Other proteins in same PDB: d2c00a1, d2c00a2, d2c00b1, d2c00b2
        automated match to d2w70a3
        complexed with so4
    2. Domain for 2vqd:
  14. 2427070Staphylococcus aureus [TaxId:1280] [255619] (1 PDB entry)
  15. 2427073Thermus thermophilus [TaxId:300852] [346267] (1 PDB entry)
  16. 2427076Yersinia pestis [TaxId:214092] [255971] (1 PDB entry)

More info for Protein automated matches from b.84.2.0: automated matches

Timeline for Protein automated matches from b.84.2.0: automated matches: