Lineage for Protein: automated matches
- Root: SCOPe 2.05
Class a: All alpha proteins [46456] (286 folds) 
Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
Superfamily a.4.13: Sigma3 and sigma4 domains of RNA polymerase sigma factors [88659] (4 families) 
Family a.4.13.0: automated matches [254211] (1 protein)
not a true familyProtein automated matches [254475] (3 species)
not a true protein
Species:
Thermus thermophilus HB8 [TaxId:300852] [255804] (3 PDB entries) - Domains for 3dxj:
Domain d3dxjf2: 3dxj F:258-318 [239226]
Other proteins in same PDB: d3dxjc_, d3dxjd_, d3dxje_, d3dxjf1, d3dxjm_, d3dxjn_, d3dxjo_, d3dxjp1
automated match to d1smyf1
protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn
Domain d3dxjf3: 3dxj F:319-422 [239227]
Other proteins in same PDB: d3dxjc_, d3dxjd_, d3dxje_, d3dxjf1, d3dxjm_, d3dxjn_, d3dxjo_, d3dxjp1
automated match to d1smyf2
protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn
Domain d3dxjp2: 3dxj P:258-318 [239229]
Other proteins in same PDB: d3dxjc_, d3dxjd_, d3dxje_, d3dxjf1, d3dxjm_, d3dxjn_, d3dxjo_, d3dxjp1
automated match to d1smyf1
protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn
Domain d3dxjp3: 3dxj P:319-422 [239230]
Other proteins in same PDB: d3dxjc_, d3dxjd_, d3dxje_, d3dxjf1, d3dxjm_, d3dxjn_, d3dxjo_, d3dxjp1
automated match to d1smyf2
protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn
- Domains for 4g7h:
Domain d4g7hf2: 4g7h F:258-318 [240147]
Other proteins in same PDB: d4g7ha1, d4g7ha2, d4g7hb1, d4g7hb2, d4g7hc_, d4g7hd_, d4g7he_, d4g7hf1, d4g7hk1, d4g7hk2, d4g7hl1, d4g7hl2, d4g7hm_, d4g7hn_, d4g7ho_, d4g7hp1
automated match to d1smyf1
protein/DNA complex; protein/RNA complex; complexed with mg, zn
Domain d4g7hf3: 4g7h F:319-423 [240148]
Other proteins in same PDB: d4g7ha1, d4g7ha2, d4g7hb1, d4g7hb2, d4g7hc_, d4g7hd_, d4g7he_, d4g7hf1, d4g7hk1, d4g7hk2, d4g7hl1, d4g7hl2, d4g7hm_, d4g7hn_, d4g7ho_, d4g7hp1
automated match to d1smyf2
protein/DNA complex; protein/RNA complex; complexed with mg, zn
Domain d4g7hp2: 4g7h P:258-318 [240150]
Other proteins in same PDB: d4g7ha1, d4g7ha2, d4g7hb1, d4g7hb2, d4g7hc_, d4g7hd_, d4g7he_, d4g7hf1, d4g7hk1, d4g7hk2, d4g7hl1, d4g7hl2, d4g7hm_, d4g7hn_, d4g7ho_, d4g7hp1
automated match to d1smyf1
protein/DNA complex; protein/RNA complex; complexed with mg, zn
Domain d4g7hp3: 4g7h P:319-423 [240151]
Other proteins in same PDB: d4g7ha1, d4g7ha2, d4g7hb1, d4g7hb2, d4g7hc_, d4g7hd_, d4g7he_, d4g7hf1, d4g7hk1, d4g7hk2, d4g7hl1, d4g7hl2, d4g7hm_, d4g7hn_, d4g7ho_, d4g7hp1
automated match to d1smyf2
protein/DNA complex; protein/RNA complex; complexed with mg, zn
- Domains for 4g7o:
Domain d4g7of2: 4g7o F:258-318 [240153]
Other proteins in same PDB: d4g7oa1, d4g7oa2, d4g7ob1, d4g7ob2, d4g7oc_, d4g7od_, d4g7oe_, d4g7of1, d4g7ok1, d4g7ok2, d4g7ol1, d4g7ol2, d4g7om_, d4g7on_, d4g7oo_, d4g7op1
automated match to d1smyf1
protein/DNA complex; protein/RNA complex; complexed with mg, zn
Domain d4g7of3: 4g7o F:319-423 [240154]
Other proteins in same PDB: d4g7oa1, d4g7oa2, d4g7ob1, d4g7ob2, d4g7oc_, d4g7od_, d4g7oe_, d4g7of1, d4g7ok1, d4g7ok2, d4g7ol1, d4g7ol2, d4g7om_, d4g7on_, d4g7oo_, d4g7op1
automated match to d1smyf2
protein/DNA complex; protein/RNA complex; complexed with mg, zn
Domain d4g7op2: 4g7o P:258-318 [240156]
Other proteins in same PDB: d4g7oa1, d4g7oa2, d4g7ob1, d4g7ob2, d4g7oc_, d4g7od_, d4g7oe_, d4g7of1, d4g7ok1, d4g7ok2, d4g7ol1, d4g7ol2, d4g7om_, d4g7on_, d4g7oo_, d4g7op1
automated match to d1smyf1
protein/DNA complex; protein/RNA complex; complexed with mg, zn
Domain d4g7op3: 4g7o P:319-423 [240157]
Other proteins in same PDB: d4g7oa1, d4g7oa2, d4g7ob1, d4g7ob2, d4g7oc_, d4g7od_, d4g7oe_, d4g7of1, d4g7ok1, d4g7ok2, d4g7ol1, d4g7ol2, d4g7om_, d4g7on_, d4g7oo_, d4g7op1
automated match to d1smyf2
protein/DNA complex; protein/RNA complex; complexed with mg, zn
- Domains for 3dxj:
- Thermus thermophilus [TaxId:274] [255021] (1 PDB entry)
- Domains for 1zyr:
Domain d1zyrf1: 1zyr F:258-318 [125856]
Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyrd_, d1zyre_, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyrn_, d1zyro_, d1zyrp3
automated match to d1smyf1
protein/RNA complex; complexed with mg, std, zn
Domain d1zyrf2: 1zyr F:319-423 [125857]
Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyrd_, d1zyre_, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyrn_, d1zyro_, d1zyrp3
automated match to d1smyf2
protein/RNA complex; complexed with mg, std, zn
Domain d1zyrp1: 1zyr P:258-318 [125866]
Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyrd_, d1zyre_, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyrn_, d1zyro_, d1zyrp3
automated match to d1smyf1
protein/RNA complex; complexed with mg, std, zn
Domain d1zyrp2: 1zyr P:319-423 [125867]
Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyrd_, d1zyre_, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyrn_, d1zyro_, d1zyrp3
automated match to d1smyf2
protein/RNA complex; complexed with mg, std, zn
- Domains for 1zyr:
Thermus thermophilus [TaxId:300852] [257268] (3 PDB entries) - Domains for 4oio:
Domain d4oiof2: 4oio F:258-318 [257269]
Other proteins in same PDB: d4oioc_, d4oiod_, d4oioe_, d4oiof1
automated match to d1smyf1
protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn
Domain d4oiof3: 4oio F:319-421 [257270]
Other proteins in same PDB: d4oioc_, d4oiod_, d4oioe_, d4oiof1
automated match to d1smyf2
protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn
- Domains for 4q4z:
Domain d4q4zf2: 4q4z F:258-318 [258307]
Other proteins in same PDB: d4q4za1, d4q4za2, d4q4zb1, d4q4zb2, d4q4zc_, d4q4zd_, d4q4ze_, d4q4zf1
automated match to d1smyf1
protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn
Domain d4q4zf3: 4q4z F:319-423 [258308]
Other proteins in same PDB: d4q4za1, d4q4za2, d4q4zb1, d4q4zb2, d4q4zc_, d4q4zd_, d4q4ze_, d4q4zf1
automated match to d1smyf2
protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn
- Domains for 4q5s:
Domain d4q5sf2: 4q5s F:258-318 [259968]
Other proteins in same PDB: d4q5sc_, d4q5sd_, d4q5se_, d4q5sf1
automated match to d1smyf1
protein/DNA complex; protein/RNA complex; complexed with atp, mg, zn
Domain d4q5sf3: 4q5s F:319-422 [259969]
Other proteins in same PDB: d4q5sc_, d4q5sd_, d4q5se_, d4q5sf1
automated match to d1smyf2
protein/DNA complex; protein/RNA complex; complexed with atp, mg, zn
- Domains for 4oio:
More info for Protein automated matches from a.4.13.0: automated matches
Timeline for Protein automated matches from a.4.13.0: automated matches:
- Protein automated matches from a.4.13.0: automated matches first appeared in SCOPe 2.04
- Protein automated matches from a.4.13.0: automated matches appears in SCOPe 2.06
- Protein automated matches from a.4.13.0: automated matches appears in the current release, SCOPe 2.08