![]() | Class a: All alpha proteins [46456] (286 folds) |
![]() | Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies) core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down |
![]() | Superfamily a.4.13: Sigma3 and sigma4 domains of RNA polymerase sigma factors [88659] (4 families) ![]() |
![]() | Family a.4.13.0: automated matches [254211] (1 protein) not a true family |
![]() | Protein automated matches [254475] (3 species) not a true protein |
![]() | Thermus thermophilus HB8 [TaxId:300852] [255804] (3 PDB entries) |
![]() | Domain d3dxjf2: 3dxj F:258-318 [239226] Other proteins in same PDB: d3dxjc_, d3dxjd_, d3dxje_, d3dxjf1, d3dxjm_, d3dxjn_, d3dxjo_, d3dxjp1 automated match to d1smyf1 protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn |
![]() | Domain d3dxjf3: 3dxj F:319-422 [239227] Other proteins in same PDB: d3dxjc_, d3dxjd_, d3dxje_, d3dxjf1, d3dxjm_, d3dxjn_, d3dxjo_, d3dxjp1 automated match to d1smyf2 protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn |
![]() | Domain d3dxjp2: 3dxj P:258-318 [239229] Other proteins in same PDB: d3dxjc_, d3dxjd_, d3dxje_, d3dxjf1, d3dxjm_, d3dxjn_, d3dxjo_, d3dxjp1 automated match to d1smyf1 protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn |
![]() | Domain d3dxjp3: 3dxj P:319-422 [239230] Other proteins in same PDB: d3dxjc_, d3dxjd_, d3dxje_, d3dxjf1, d3dxjm_, d3dxjn_, d3dxjo_, d3dxjp1 automated match to d1smyf2 protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn |
![]() | Domain d4g7hf2: 4g7h F:258-318 [240147] Other proteins in same PDB: d4g7ha1, d4g7ha2, d4g7hb1, d4g7hb2, d4g7hc_, d4g7hd_, d4g7he_, d4g7hf1, d4g7hk1, d4g7hk2, d4g7hl1, d4g7hl2, d4g7hm_, d4g7hn_, d4g7ho_, d4g7hp1 automated match to d1smyf1 protein/DNA complex; protein/RNA complex; complexed with mg, zn |
![]() | Domain d4g7hf3: 4g7h F:319-423 [240148] Other proteins in same PDB: d4g7ha1, d4g7ha2, d4g7hb1, d4g7hb2, d4g7hc_, d4g7hd_, d4g7he_, d4g7hf1, d4g7hk1, d4g7hk2, d4g7hl1, d4g7hl2, d4g7hm_, d4g7hn_, d4g7ho_, d4g7hp1 automated match to d1smyf2 protein/DNA complex; protein/RNA complex; complexed with mg, zn |
![]() | Domain d4g7hp2: 4g7h P:258-318 [240150] Other proteins in same PDB: d4g7ha1, d4g7ha2, d4g7hb1, d4g7hb2, d4g7hc_, d4g7hd_, d4g7he_, d4g7hf1, d4g7hk1, d4g7hk2, d4g7hl1, d4g7hl2, d4g7hm_, d4g7hn_, d4g7ho_, d4g7hp1 automated match to d1smyf1 protein/DNA complex; protein/RNA complex; complexed with mg, zn |
![]() | Domain d4g7hp3: 4g7h P:319-423 [240151] Other proteins in same PDB: d4g7ha1, d4g7ha2, d4g7hb1, d4g7hb2, d4g7hc_, d4g7hd_, d4g7he_, d4g7hf1, d4g7hk1, d4g7hk2, d4g7hl1, d4g7hl2, d4g7hm_, d4g7hn_, d4g7ho_, d4g7hp1 automated match to d1smyf2 protein/DNA complex; protein/RNA complex; complexed with mg, zn |
![]() | Domain d4g7of2: 4g7o F:258-318 [240153] Other proteins in same PDB: d4g7oa1, d4g7oa2, d4g7ob1, d4g7ob2, d4g7oc_, d4g7od_, d4g7oe_, d4g7of1, d4g7ok1, d4g7ok2, d4g7ol1, d4g7ol2, d4g7om_, d4g7on_, d4g7oo_, d4g7op1 automated match to d1smyf1 protein/DNA complex; protein/RNA complex; complexed with mg, zn |
![]() | Domain d4g7of3: 4g7o F:319-423 [240154] Other proteins in same PDB: d4g7oa1, d4g7oa2, d4g7ob1, d4g7ob2, d4g7oc_, d4g7od_, d4g7oe_, d4g7of1, d4g7ok1, d4g7ok2, d4g7ol1, d4g7ol2, d4g7om_, d4g7on_, d4g7oo_, d4g7op1 automated match to d1smyf2 protein/DNA complex; protein/RNA complex; complexed with mg, zn |
![]() | Domain d4g7op2: 4g7o P:258-318 [240156] Other proteins in same PDB: d4g7oa1, d4g7oa2, d4g7ob1, d4g7ob2, d4g7oc_, d4g7od_, d4g7oe_, d4g7of1, d4g7ok1, d4g7ok2, d4g7ol1, d4g7ol2, d4g7om_, d4g7on_, d4g7oo_, d4g7op1 automated match to d1smyf1 protein/DNA complex; protein/RNA complex; complexed with mg, zn |
![]() | Domain d4g7op3: 4g7o P:319-423 [240157] Other proteins in same PDB: d4g7oa1, d4g7oa2, d4g7ob1, d4g7ob2, d4g7oc_, d4g7od_, d4g7oe_, d4g7of1, d4g7ok1, d4g7ok2, d4g7ol1, d4g7ol2, d4g7om_, d4g7on_, d4g7oo_, d4g7op1 automated match to d1smyf2 protein/DNA complex; protein/RNA complex; complexed with mg, zn |
![]() | Domain d1zyrf1: 1zyr F:258-318 [125856] Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyrd_, d1zyre_, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyrn_, d1zyro_, d1zyrp3 automated match to d1smyf1 protein/RNA complex; complexed with mg, std, zn |
![]() | Domain d1zyrf2: 1zyr F:319-423 [125857] Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyrd_, d1zyre_, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyrn_, d1zyro_, d1zyrp3 automated match to d1smyf2 protein/RNA complex; complexed with mg, std, zn |
![]() | Domain d1zyrp1: 1zyr P:258-318 [125866] Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyrd_, d1zyre_, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyrn_, d1zyro_, d1zyrp3 automated match to d1smyf1 protein/RNA complex; complexed with mg, std, zn |
![]() | Domain d1zyrp2: 1zyr P:319-423 [125867] Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyrd_, d1zyre_, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyrn_, d1zyro_, d1zyrp3 automated match to d1smyf2 protein/RNA complex; complexed with mg, std, zn |
![]() | Thermus thermophilus [TaxId:300852] [257268] (3 PDB entries) |
![]() | Domain d4oiof2: 4oio F:258-318 [257269] Other proteins in same PDB: d4oioc_, d4oiod_, d4oioe_, d4oiof1 automated match to d1smyf1 protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn |
![]() | Domain d4oiof3: 4oio F:319-421 [257270] Other proteins in same PDB: d4oioc_, d4oiod_, d4oioe_, d4oiof1 automated match to d1smyf2 protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn |
![]() | Domain d4q4zf2: 4q4z F:258-318 [258307] Other proteins in same PDB: d4q4za1, d4q4za2, d4q4zb1, d4q4zb2, d4q4zc_, d4q4zd_, d4q4ze_, d4q4zf1 automated match to d1smyf1 protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn |
![]() | Domain d4q4zf3: 4q4z F:319-423 [258308] Other proteins in same PDB: d4q4za1, d4q4za2, d4q4zb1, d4q4zb2, d4q4zc_, d4q4zd_, d4q4ze_, d4q4zf1 automated match to d1smyf2 protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn |
![]() | Domain d4q5sf2: 4q5s F:258-318 [259968] Other proteins in same PDB: d4q5sc_, d4q5sd_, d4q5se_, d4q5sf1 automated match to d1smyf1 protein/DNA complex; protein/RNA complex; complexed with atp, mg, zn |
![]() | Domain d4q5sf3: 4q5s F:319-422 [259969] Other proteins in same PDB: d4q5sc_, d4q5sd_, d4q5se_, d4q5sf1 automated match to d1smyf2 protein/DNA complex; protein/RNA complex; complexed with atp, mg, zn |
Timeline for Protein automated matches from a.4.13.0: automated matches: