Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1981147Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. 1984585Superfamily a.4.13: Sigma3 and sigma4 domains of RNA polymerase sigma factors [88659] (4 families) (S)
  5. 1984684Family a.4.13.0: automated matches [254211] (1 protein)
    not a true family
  6. 1984685Protein automated matches [254475] (3 species)
    not a true protein

Species:

  1. 1984686Thermus thermophilus HB8 [TaxId:300852] [255804] (3 PDB entries)
    1. Domains for 3dxj:
      1. 1984695Domain d3dxjf2: 3dxj F:258-318 [239226]
        Other proteins in same PDB: d3dxjc_, d3dxjd_, d3dxje_, d3dxjf1, d3dxjm_, d3dxjn_, d3dxjo_, d3dxjp1
        automated match to d1smyf1
        protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn
      2. 1984696Domain d3dxjf3: 3dxj F:319-422 [239227]
        Other proteins in same PDB: d3dxjc_, d3dxjd_, d3dxje_, d3dxjf1, d3dxjm_, d3dxjn_, d3dxjo_, d3dxjp1
        automated match to d1smyf2
        protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn
      3. 1984697Domain d3dxjp2: 3dxj P:258-318 [239229]
        Other proteins in same PDB: d3dxjc_, d3dxjd_, d3dxje_, d3dxjf1, d3dxjm_, d3dxjn_, d3dxjo_, d3dxjp1
        automated match to d1smyf1
        protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn
      4. 1984698Domain d3dxjp3: 3dxj P:319-422 [239230]
        Other proteins in same PDB: d3dxjc_, d3dxjd_, d3dxje_, d3dxjf1, d3dxjm_, d3dxjn_, d3dxjo_, d3dxjp1
        automated match to d1smyf2
        protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn
    2. Domains for 4g7h:
      1. 1984687Domain d4g7hf2: 4g7h F:258-318 [240147]
        Other proteins in same PDB: d4g7ha1, d4g7ha2, d4g7hb1, d4g7hb2, d4g7hc_, d4g7hd_, d4g7he_, d4g7hf1, d4g7hk1, d4g7hk2, d4g7hl1, d4g7hl2, d4g7hm_, d4g7hn_, d4g7ho_, d4g7hp1
        automated match to d1smyf1
        protein/DNA complex; protein/RNA complex; complexed with mg, zn
      2. 1984688Domain d4g7hf3: 4g7h F:319-423 [240148]
        Other proteins in same PDB: d4g7ha1, d4g7ha2, d4g7hb1, d4g7hb2, d4g7hc_, d4g7hd_, d4g7he_, d4g7hf1, d4g7hk1, d4g7hk2, d4g7hl1, d4g7hl2, d4g7hm_, d4g7hn_, d4g7ho_, d4g7hp1
        automated match to d1smyf2
        protein/DNA complex; protein/RNA complex; complexed with mg, zn
      3. 1984689Domain d4g7hp2: 4g7h P:258-318 [240150]
        Other proteins in same PDB: d4g7ha1, d4g7ha2, d4g7hb1, d4g7hb2, d4g7hc_, d4g7hd_, d4g7he_, d4g7hf1, d4g7hk1, d4g7hk2, d4g7hl1, d4g7hl2, d4g7hm_, d4g7hn_, d4g7ho_, d4g7hp1
        automated match to d1smyf1
        protein/DNA complex; protein/RNA complex; complexed with mg, zn
      4. 1984690Domain d4g7hp3: 4g7h P:319-423 [240151]
        Other proteins in same PDB: d4g7ha1, d4g7ha2, d4g7hb1, d4g7hb2, d4g7hc_, d4g7hd_, d4g7he_, d4g7hf1, d4g7hk1, d4g7hk2, d4g7hl1, d4g7hl2, d4g7hm_, d4g7hn_, d4g7ho_, d4g7hp1
        automated match to d1smyf2
        protein/DNA complex; protein/RNA complex; complexed with mg, zn
    3. Domains for 4g7o:
      1. 1984691Domain d4g7of2: 4g7o F:258-318 [240153]
        Other proteins in same PDB: d4g7oa1, d4g7oa2, d4g7ob1, d4g7ob2, d4g7oc_, d4g7od_, d4g7oe_, d4g7of1, d4g7ok1, d4g7ok2, d4g7ol1, d4g7ol2, d4g7om_, d4g7on_, d4g7oo_, d4g7op1
        automated match to d1smyf1
        protein/DNA complex; protein/RNA complex; complexed with mg, zn
      2. 1984692Domain d4g7of3: 4g7o F:319-423 [240154]
        Other proteins in same PDB: d4g7oa1, d4g7oa2, d4g7ob1, d4g7ob2, d4g7oc_, d4g7od_, d4g7oe_, d4g7of1, d4g7ok1, d4g7ok2, d4g7ol1, d4g7ol2, d4g7om_, d4g7on_, d4g7oo_, d4g7op1
        automated match to d1smyf2
        protein/DNA complex; protein/RNA complex; complexed with mg, zn
      3. 1984693Domain d4g7op2: 4g7o P:258-318 [240156]
        Other proteins in same PDB: d4g7oa1, d4g7oa2, d4g7ob1, d4g7ob2, d4g7oc_, d4g7od_, d4g7oe_, d4g7of1, d4g7ok1, d4g7ok2, d4g7ol1, d4g7ol2, d4g7om_, d4g7on_, d4g7oo_, d4g7op1
        automated match to d1smyf1
        protein/DNA complex; protein/RNA complex; complexed with mg, zn
      4. 1984694Domain d4g7op3: 4g7o P:319-423 [240157]
        Other proteins in same PDB: d4g7oa1, d4g7oa2, d4g7ob1, d4g7ob2, d4g7oc_, d4g7od_, d4g7oe_, d4g7of1, d4g7ok1, d4g7ok2, d4g7ol1, d4g7ol2, d4g7om_, d4g7on_, d4g7oo_, d4g7op1
        automated match to d1smyf2
        protein/DNA complex; protein/RNA complex; complexed with mg, zn
  2. Thermus thermophilus [TaxId:274] [255021] (2 PDB entries)
    1. Domains for 1zyr:
      1. 1984700Domain d1zyrf1: 1zyr F:258-318 [125856]
        Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyrd_, d1zyre_, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyrn_, d1zyro_, d1zyrp3
        automated match to d1smyf1
        protein/RNA complex; complexed with mg, std, zn
      2. 1984701Domain d1zyrf2: 1zyr F:319-423 [125857]
        Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyrd_, d1zyre_, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyrn_, d1zyro_, d1zyrp3
        automated match to d1smyf2
        protein/RNA complex; complexed with mg, std, zn
      3. 1984702Domain d1zyrp1: 1zyr P:258-318 [125866]
        Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyrd_, d1zyre_, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyrn_, d1zyro_, d1zyrp3
        automated match to d1smyf1
        protein/RNA complex; complexed with mg, std, zn
      4. 1984703Domain d1zyrp2: 1zyr P:319-423 [125867]
        Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyrd_, d1zyre_, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyrn_, d1zyro_, d1zyrp3
        automated match to d1smyf2
        protein/RNA complex; complexed with mg, std, zn
    2. Domains for 5tmf:
      1. 2283209Domain d5tmff2: 5tmf F:258-318 [326510]
        Other proteins in same PDB: d5tmfc_, d5tmfd_, d5tmfe_, d5tmff1
        automated match to d1smyf1
        complexed with mg, ne6, po4, zn
      2. 2283210Domain d5tmff3: 5tmf F:319-423 [326511]
        Other proteins in same PDB: d5tmfc_, d5tmfd_, d5tmfe_, d5tmff1
        automated match to d1smyf2
        complexed with mg, ne6, po4, zn
  3. 1984704Thermus thermophilus [TaxId:300852] [257268] (3 PDB entries)
    1. Domains for 4oio:
      1. 1984705Domain d4oiof2: 4oio F:258-318 [257269]
        Other proteins in same PDB: d4oioc_, d4oiod_, d4oioe_, d4oiof1
        automated match to d1smyf1
        protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn
      2. 1984706Domain d4oiof3: 4oio F:319-421 [257270]
        Other proteins in same PDB: d4oioc_, d4oiod_, d4oioe_, d4oiof1
        automated match to d1smyf2
        protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn
    2. Domains for 4q4z:
      1. 1984707Domain d4q4zf2: 4q4z F:258-318 [258307]
        Other proteins in same PDB: d4q4za1, d4q4za2, d4q4zb1, d4q4zb2, d4q4zc_, d4q4zd_, d4q4ze_, d4q4zf1
        automated match to d1smyf1
        protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn
      2. 1984708Domain d4q4zf3: 4q4z F:319-423 [258308]
        Other proteins in same PDB: d4q4za1, d4q4za2, d4q4zb1, d4q4zb2, d4q4zc_, d4q4zd_, d4q4ze_, d4q4zf1
        automated match to d1smyf2
        protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn
    3. Domains for 4q5s:
      1. 1984709Domain d4q5sf2: 4q5s F:258-318 [259968]
        Other proteins in same PDB: d4q5sc_, d4q5sd_, d4q5se_, d4q5sf1
        automated match to d1smyf1
        protein/DNA complex; protein/RNA complex; complexed with atp, mg, zn
      2. 1984710Domain d4q5sf3: 4q5s F:319-422 [259969]
        Other proteins in same PDB: d4q5sc_, d4q5sd_, d4q5se_, d4q5sf1
        automated match to d1smyf2
        protein/DNA complex; protein/RNA complex; complexed with atp, mg, zn

More info for Protein automated matches from a.4.13.0: automated matches

Timeline for Protein automated matches from a.4.13.0: automated matches: