SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
Multidomain subunits of complex domain organization

Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (3 families)

(S)

The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit

Family e.29.1.2: RNA-polymerase beta-prime [64490] (4 proteins)
Protein automated matches [254473] (5 species)
not a true protein

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255953] (4 PDB entries)

Domain for 3m3y:

Domain d3m3ya_: 3m3y A: [247588]
Other proteins in same PDB: d3m3yb_, d3m3ye1, d3m3ye2, d3m3yf_, d3m3yh_, d3m3yi1, d3m3yi2, d3m3yj_, d3m3yk_, d3m3yl_
automated match to d1i3qa_
protein/DNA complex; protein/RNA complex; complexed with c7p, mg, zn

Domain for 3s1m:

Domain d3s1ma_: 3s1m A: [249263]
Other proteins in same PDB: d3s1mb_, d3s1me1, d3s1me2, d3s1mf_, d3s1mh_, d3s1mi1, d3s1mi2, d3s1mj_, d3s1mk_, d3s1ml_
automated match to d1i3qa_
protein/DNA complex; protein/RNA complex; complexed with mg, zn

Domain for 3s1n:

Domain d3s1na_: 3s1n A: [249274]
Other proteins in same PDB: d3s1nb_, d3s1ne1, d3s1ne2, d3s1nf_, d3s1nh_, d3s1ni1, d3s1ni2, d3s1nj_, d3s1nk_, d3s1nl_
automated match to d1i3qa_
protein/DNA complex; protein/RNA complex; complexed with mg, zn

Domain for 4c3i:

Domain d4c3ia_: 4c3i A: [343935]
Other proteins in same PDB: d4c3ib_, d4c3ie1, d4c3ie2, d4c3if_, d4c3ig1, d4c3ih_, d4c3ii1, d4c3ii2, d4c3ij_, d4c3ik_, d4c3il_, d4c3im_, d4c3in_
automated match to d4c3ha_
complexed with mg, mpd, so4, zn

Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [256074] (1 PDB entry)

Domain for 3rzo:

Domain d3rzoa_: 3rzo A: [249244]
Other proteins in same PDB: d3rzob_, d3rzoe1, d3rzoe2, d3rzof_, d3rzoh_, d3rzoi1, d3rzoi2, d3rzoj_, d3rzok_, d3rzol_
automated match to d1i3qa_
protein/DNA complex; protein/RNA complex; complexed with zn

Thermus thermophilus HB8 [TaxId:300852] [255520] (3 PDB entries)

Domains for 2o5j:
1. Domain d2o5jd_: 2o5j D: [148606]
  Other proteins in same PDB: d2o5jc_, d2o5je_, d2o5jm_, d2o5jo_
  automated match to d4g7od_
  protein/DNA complex; protein/RNA complex; complexed with apc, mg, zn
2. Domain d2o5jn_: 2o5j N: [148608]
  Other proteins in same PDB: d2o5jc_, d2o5je_, d2o5jm_, d2o5jo_
  automated match to d4g7od_
  protein/DNA complex; protein/RNA complex; complexed with apc, mg, zn
Domains for 2ppb:
1. Domain d2ppbd_: 2ppb D: [149754]
  Other proteins in same PDB: d2ppbc_, d2ppbe_, d2ppbm_, d2ppbo_
  automated match to d4g7od_
  protein/DNA complex; protein/RNA complex; complexed with apc, mg, std, zn
2. Domain d2ppbn_: 2ppb N: [149756]
  Other proteins in same PDB: d2ppbc_, d2ppbe_, d2ppbm_, d2ppbo_
  automated match to d4g7od_
  protein/DNA complex; protein/RNA complex; complexed with apc, mg, std, zn

Domains for 3dxj:

Domain d3dxjd_: 3dxj D: [157928]
Other proteins in same PDB: d3dxjc_, d3dxje_, d3dxjf1, d3dxjf2, d3dxjf3, d3dxjm_, d3dxjo_, d3dxjp1, d3dxjp2, d3dxjp3
automated match to d4g7od_
protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn

Domain d3dxjn_: 3dxj N: [157931]
Other proteins in same PDB: d3dxjc_, d3dxje_, d3dxjf1, d3dxjf2, d3dxjf3, d3dxjm_, d3dxjo_, d3dxjp1, d3dxjp2, d3dxjp3
automated match to d4g7od_
protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn

Thermus thermophilus [TaxId:274] [255019] (2 PDB entries)

Domains for 1zyr:

Domain d1zyrd_: 1zyr D: [125854]
Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyre_, d1zyrf1, d1zyrf2, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyro_, d1zyrp1, d1zyrp2, d1zyrp3
automated match to d4g7od_
protein/RNA complex; complexed with mg, std, zn

Domain d1zyrn_: 1zyr N: [125864]
Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyre_, d1zyrf1, d1zyrf2, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyro_, d1zyrp1, d1zyrp2, d1zyrp3
automated match to d4g7od_
protein/RNA complex; complexed with mg, std, zn

Domain for 5tmf:
- Domain d5tmfd_: 5tmf D: [326516]
  Other proteins in same PDB: d5tmfc_, d5tmfe_, d5tmff1, d5tmff2, d5tmff3
  automated match to d4g7od_
  complexed with mg, ne6, po4, zn

Thermus thermophilus [TaxId:300852] [257261] (2 PDB entries)

Domain for 4oio:

Domain d4oiod_: 4oio D: [257262]
Other proteins in same PDB: d4oioc_, d4oioe_, d4oiof1, d4oiof2, d4oiof3
automated match to d4g7od_
protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn

Domain for 4q5s:
- Domain d4q5sd_: 4q5s D: [259965]
  Other proteins in same PDB: d4q5sc_, d4q5se_, d4q5sf1, d4q5sf2, d4q5sf3
  automated match to d4g7od_
  protein/DNA complex; protein/RNA complex; complexed with atp, mg, zn

More info for Protein automated matches from e.29.1.2: RNA-polymerase beta-prime

Timeline for Protein automated matches from e.29.1.2: RNA-polymerase beta-prime:

Protein automated matches from e.29.1.2: RNA-polymerase beta-prime first appeared in SCOPe 2.04
Protein automated matches from e.29.1.2: RNA-polymerase beta-prime appears in SCOPe 2.06
Protein automated matches from e.29.1.2: RNA-polymerase beta-prime appears in the current release, SCOPe 2.08