Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2568173Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
  3. 2574250Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
    Multidomain subunits of complex domain organization
  4. 2574251Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (2 families) (S)
    The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit
  5. 2574346Family e.29.1.2: RNA-polymerase beta-prime [64490] (4 proteins)
  6. 2574414Protein automated matches [254473] (5 species)
    not a true protein

Species:

  1. 2574415Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255953] (4 PDB entries)
    1. Domain for 3m3y:
    2. Domain for 3s1m:
    3. Domain for 3s1n:
    4. Domain for 4c3i:
  2. 2574420Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [256074] (1 PDB entry)
  3. 2574422Thermus thermophilus HB8 [TaxId:300852] [255520] (3 PDB entries)
    1. Domains for 2o5j:
      1. 2574423Domain d2o5jd_: 2o5j D: [148606]
        Other proteins in same PDB: d2o5jc_, d2o5je_, d2o5jm_, d2o5jo_
        automated match to d4g7od_
        protein/DNA complex; protein/RNA complex; complexed with apc, mg, zn
      2. 2574424Domain d2o5jn_: 2o5j N: [148608]
        Other proteins in same PDB: d2o5jc_, d2o5je_, d2o5jm_, d2o5jo_
        automated match to d4g7od_
        protein/DNA complex; protein/RNA complex; complexed with apc, mg, zn
    2. Domains for 2ppb:
      1. 2574425Domain d2ppbd_: 2ppb D: [149754]
        Other proteins in same PDB: d2ppbc_, d2ppbe_, d2ppbm_, d2ppbo_
        automated match to d4g7od_
        protein/DNA complex; protein/RNA complex; complexed with apc, mg, std, zn
      2. 2574426Domain d2ppbn_: 2ppb N: [149756]
        Other proteins in same PDB: d2ppbc_, d2ppbe_, d2ppbm_, d2ppbo_
        automated match to d4g7od_
        protein/DNA complex; protein/RNA complex; complexed with apc, mg, std, zn
    3. Domains for 3dxj:
      1. 2574427Domain d3dxjd_: 3dxj D: [157928]
        Other proteins in same PDB: d3dxjc_, d3dxje_, d3dxjf1, d3dxjf2, d3dxjf3, d3dxjm_, d3dxjo_, d3dxjp1, d3dxjp2, d3dxjp3
        automated match to d4g7od_
        protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn
      2. 2574428Domain d3dxjn_: 3dxj N: [157931]
        Other proteins in same PDB: d3dxjc_, d3dxje_, d3dxjf1, d3dxjf2, d3dxjf3, d3dxjm_, d3dxjo_, d3dxjp1, d3dxjp2, d3dxjp3
        automated match to d4g7od_
        protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn
  4. 2574429Thermus thermophilus [TaxId:274] [255019] (2 PDB entries)
    1. Domains for 1zyr:
      1. 2574431Domain d1zyrd_: 1zyr D: [125854]
        Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyre_, d1zyrf1, d1zyrf2, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyro_, d1zyrp1, d1zyrp2, d1zyrp3
        automated match to d4g7od_
        protein/RNA complex; complexed with mg, std, zn
      2. 2574432Domain d1zyrn_: 1zyr N: [125864]
        Other proteins in same PDB: d1zyra1, d1zyra2, d1zyrb1, d1zyrb2, d1zyrc_, d1zyre_, d1zyrf1, d1zyrf2, d1zyrf3, d1zyrk1, d1zyrk2, d1zyrl1, d1zyrl2, d1zyrm_, d1zyro_, d1zyrp1, d1zyrp2, d1zyrp3
        automated match to d4g7od_
        protein/RNA complex; complexed with mg, std, zn
    2. Domain for 5tmf:
  5. 2574433Thermus thermophilus [TaxId:300852] [257261] (2 PDB entries)
    1. Domain for 4oio:
    2. Domain for 4q5s:

More info for Protein automated matches from e.29.1.2: RNA-polymerase beta-prime

Timeline for Protein automated matches from e.29.1.2: RNA-polymerase beta-prime: