SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
Fold f.21: Heme-binding four-helical bundle [81344] (3 superfamilies)
core: four transmembrane helices, up-and-down bundle, binds one or two heme groups in between the helices

Superfamily f.21.2: Fumarate reductase respiratory complex transmembrane subunits [81343] (2 families)

two distinct families: in one family the common fold is contained in a single-chain subunit, in the other it is formed by two chains

Family f.21.2.2: Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) [81373] (7 proteins)
consists of two homologous non-identical subunits that form a heterodimer; may or may not contain heme groups

Protein automated matches [254461] (3 species)
not a true protein

Species:

Chicken (Gallus gallus) [TaxId:9031] [254987] (13 PDB entries)

Domains for 1yq3:
1. Domain d1yq3c_: 1yq3 C: [238601]
  Other proteins in same PDB: d1yq3b1, d1yq3b2
  automated match to d1zoyc_
  complexed with f3s, fad, fes, gol, hem, jzr, pee, sf4, teo, unl, uq
2. Domain d1yq3d_: 1yq3 D: [238602]
  Other proteins in same PDB: d1yq3b1, d1yq3b2
  automated match to d1zoyd_
  complexed with f3s, fad, fes, gol, hem, jzr, pee, sf4, teo, unl, uq
Domains for 1yq4:
1. Domain d1yq4c_: 1yq4 C: [241055]
  Other proteins in same PDB: d1yq4b1, d1yq4b2
  automated match to d1zoyc_
  complexed with 3np, f3s, fad, fes, gol, hem, jzr, pee, sf4, uq
2. Domain d1yq4d_: 1yq4 D: [241056]
  Other proteins in same PDB: d1yq4b1, d1yq4b2
  automated match to d1zoyd_
  complexed with 3np, f3s, fad, fes, gol, hem, jzr, pee, sf4, uq

Domains for 2fbw:

Domain d2fbwc_: 2fbw C: [241821]
Other proteins in same PDB: d2fbwb1, d2fbwb2, d2fbwo1, d2fbwo2
automated match to d1zoyc_
complexed with azi, bog, cbe, f3s, fad, fes, gol, hem, k, na, sf4, umq, unl, y3p

Domain d2fbwd_: 2fbw D: [241822]
Other proteins in same PDB: d2fbwb1, d2fbwb2, d2fbwo1, d2fbwo2
automated match to d1zoyd_
complexed with azi, bog, cbe, f3s, fad, fes, gol, hem, k, na, sf4, umq, unl, y3p

Domain d2fbwp_: 2fbw P: [241825]
Other proteins in same PDB: d2fbwb1, d2fbwb2, d2fbwo1, d2fbwo2
automated match to d1zoyc_
complexed with azi, bog, cbe, f3s, fad, fes, gol, hem, k, na, sf4, umq, unl, y3p

Domain d2fbwq_: 2fbw Q: [241826]
Other proteins in same PDB: d2fbwb1, d2fbwb2, d2fbwo1, d2fbwo2
automated match to d1zoyd_
complexed with azi, bog, cbe, f3s, fad, fes, gol, hem, k, na, sf4, umq, unl, y3p

Domains for 2h88:
1. Domain d2h88d_: 2h88 D: [242010]
  Other proteins in same PDB: d2h88b1, d2h88b2, d2h88o1, d2h88o2
  automated match to d1zoyd_
  complexed with azi, bhg, f3s, fad, fes, gol, hem, k, sf4, teo, unl
2. Domain d2h88q_: 2h88 Q: [242013]
  Other proteins in same PDB: d2h88b1, d2h88b2, d2h88o1, d2h88o2
  automated match to d1zoyd_
  complexed with azi, bhg, f3s, fad, fes, gol, hem, k, sf4, teo, unl
Domain for 2h89:
- Domain d2h89d_: 2h89 D: [242016]
  Other proteins in same PDB: d2h89b1, d2h89b2
  automated match to d1zoyd_
  complexed with bhg, f3s, fad, fes, hem, k, mli, pee, sf4, unl
Domains for 2wqy:
1. Domain d2wqyc_: 2wqy C: [244220]
  Other proteins in same PDB: d2wqyb1, d2wqyb2, d2wqyo1, d2wqyo2
  automated match to d1zoyc_
  complexed with azi, bhg, cbe, f3s, fad, fes, gol, hem, k, oaa, pee, sf4, unl
2. Domain d2wqyd_: 2wqy D: [244221]
  Other proteins in same PDB: d2wqyb1, d2wqyb2, d2wqyo1, d2wqyo2
  automated match to d1zoyd_
  complexed with azi, bhg, cbe, f3s, fad, fes, gol, hem, k, oaa, pee, sf4, unl
3. Domain d2wqyp_: 2wqy P: [244224]
  Other proteins in same PDB: d2wqyb1, d2wqyb2, d2wqyo1, d2wqyo2
  automated match to d1zoyc_
  complexed with azi, bhg, cbe, f3s, fad, fes, gol, hem, k, oaa, pee, sf4, unl
4. Domain d2wqyq_: 2wqy Q: [244225]
  Other proteins in same PDB: d2wqyb1, d2wqyb2, d2wqyo1, d2wqyo2
  automated match to d1zoyd_
  complexed with azi, bhg, cbe, f3s, fad, fes, gol, hem, k, oaa, pee, sf4, unl
Domain for 6myo:
- Domain d6myod_: 6myo D: [376449]
  Other proteins in same PDB: d6myob1, d6myob2
  automated match to d1yq3d_
  complexed with 3pe, f3s, fad, fes, ftn, hem, k, mn, oaa, peg, sf4, umq, unl
Domain for 6myp:
- Domain d6mypd_: 6myp D: [376467]
  Other proteins in same PDB: d6mypb1, d6mypb2
  automated match to d1yq3d_
  complexed with 3pe, bct, f3s, fad, fes, hem, k, mg, oaa, peg, sf4, ttf, umq, unl
Domain for 6myq:
- Domain d6myqd_: 6myq D: [376417]
  Other proteins in same PDB: d6myqb1, d6myqb2
  automated match to d1yq3d_
  complexed with 3pe, 9au, f3s, fad, fes, hem, k, moh, peg, sf4, umq, unl, y3p
Domain for 6myr:
- Domain d6myrd_: 6myr D: [375654]
  Other proteins in same PDB: d6myrb1, d6myrb2
  automated match to d1yq3d_
  complexed with 3pe, bog, f3s, fad, fes, hem, k, k7g, oaa, peg, sf4, umq, unl
Domain for 6mys:
- Domain d6mysd_: 6mys D: [376450]
  Other proteins in same PDB: d6mysb1, d6mysb2
  automated match to d1yq3d_
  complexed with 3pe, at5, f3s, fad, fes, hem, k, oaa, sf4, umq, unl
Domain for 6myt:
- Domain d6mytd_: 6myt D: [376522]
  Other proteins in same PDB: d6mytb1, d6mytb2
  automated match to d1yq3d_
  complexed with 3pe, at5, f3s, fad, fes, hem, k, oaa, peg, sf4, umq, unl
Domain for 6myu:
- Domain d6myud_: 6myu D: [376509]
  Other proteins in same PDB: d6myub1, d6myub2
  automated match to d1yq3d_
  complexed with 3pe, f3s, fad, fes, hem, k, oaa, peg, sf4, umq, unl

Escherichia coli [TaxId:701177] [256012] (2 PDB entries)
1. Domains for 3p4r:
  1. Domain d3p4rc_: 3p4r C: [248416]
    Other proteins in same PDB: d3p4rb1, d3p4rb2, d3p4rn1, d3p4rn2
    automated match to d3p4pc_
    complexed with f3s, fad, fes, gua, sf4
  2. Domain d3p4ro_: 3p4r O: [248419]
    Other proteins in same PDB: d3p4rb1, d3p4rb2, d3p4rn1, d3p4rn2
    automated match to d3p4pc_
    complexed with f3s, fad, fes, gua, sf4
2. Domains for 3p4s:
  1. Domain d3p4sc_: 3p4s C: [248422]
    Other proteins in same PDB: d3p4sb1, d3p4sb2, d3p4sn1, d3p4sn2
    automated match to d3p4pc_
    complexed with 3np, f3s, fad, fes, sf4
  2. Domain d3p4so_: 3p4s O: [248425]
    Other proteins in same PDB: d3p4sb1, d3p4sb2, d3p4sn1, d3p4sn2
    automated match to d3p4pc_
    complexed with 3np, f3s, fad, fes, sf4
Pig (Sus scrofa) [TaxId:9823] [255743] (5 PDB entries)
1. Domain for 3ae1:
  - Domain d3ae1d_: 3ae1 D: [245118]
    Other proteins in same PDB: d3ae1b1, d3ae1b2
    automated match to d1zoyd_
    complexed with eph, f3s, fad, fes, hem, mli, sf4, tfz
2. Domain for 3ae2:
  - Domain d3ae2d_: 3ae2 D: [245121]
    Other proteins in same PDB: d3ae2b1, d3ae2b2
    automated match to d1zoyd_
    complexed with eph, f3s, fad, fes, hem, mli, sf4, sli
3. Domain for 3aeb:
  - Domain d3aebd_: 3aeb D: [245124]
    Other proteins in same PDB: d3aebb1, d3aebb2
    automated match to d1zoyd_
    complexed with eph, f3s, f7a, fad, fes, hem, mli, sf4
4. Domain for 4ytp:
  - Domain d4ytpd_: 4ytp D: [275749]
    Other proteins in same PDB: d4ytpb1, d4ytpb2
    automated match to d1zoyd_
    complexed with e23, f3s, fad, fes, hem, sf4
5. Domain for 4yxd:
  - Domain d4yxdd_: 4yxd D: [312426]
    Other proteins in same PDB: d4yxdb1, d4yxdb2
    automated match to d4ytpd_
    complexed with f3s, fad, fes, ftn, hem, sf4

More info for Protein automated matches from f.21.2.2: Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)

Timeline for Protein automated matches from f.21.2.2: Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD):

Protein automated matches from f.21.2.2: Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) first appeared in SCOPe 2.04
Protein automated matches from f.21.2.2: Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) appears in SCOPe 2.07