SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.246: mRNA decapping enzyme DcpS N-terminal domain [102859] (1 superfamily)
beta(3)-alpha-beta(3)-alpha; 3 layers a/b/a

Superfamily d.246.1: mRNA decapping enzyme DcpS N-terminal domain [102860] (2 families)

(S)

forms swapped dimer with two 6-stranded antiparallel beta sheets; order 1236[5][4]
automatically mapped to Pfam PF05652

Family d.246.1.0: automated matches [254206] (1 protein)
not a true family
Protein automated matches [254453] (1 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [254967] (5 PDB entries)
1. Domains for 1xml:
  1. Domain d1xmla2: 1xml A:38-145 [122167]
    Other proteins in same PDB: d1xmla1, d1xmlb1
    automated match to d1st0a2
    complexed with po4
  2. Domain d1xmlb2: 1xml B:40-145 [122169]
    Other proteins in same PDB: d1xmla1, d1xmlb1
    automated match to d1st0a2
    complexed with po4
2. Domains for 1xmm:
  1. Domain d1xmma2: 1xmm A:40-145 [122171]
    Other proteins in same PDB: d1xmma1, d1xmmb1, d1xmmc1, d1xmmd1
    automated match to d1st0a2
    complexed with g7m, m7g, po4
  2. Domain d1xmmb2: 1xmm B:40-145 [122173]
    Other proteins in same PDB: d1xmma1, d1xmmb1, d1xmmc1, d1xmmd1
    automated match to d1st0a2
    complexed with g7m, m7g, po4
  3. Domain d1xmmc2: 1xmm C:39-145 [122175]
    Other proteins in same PDB: d1xmma1, d1xmmb1, d1xmmc1, d1xmmd1
    automated match to d1st0a2
    complexed with g7m, m7g, po4
  4. Domain d1xmmd2: 1xmm D:38-145 [122177]
    Other proteins in same PDB: d1xmma1, d1xmmb1, d1xmmc1, d1xmmd1
    automated match to d1st0a2
    complexed with g7m, m7g, po4
3. Domains for 4qde:
  1. Domain d4qdea1: 4qde A:40-145 [272662]
    Other proteins in same PDB: d4qdea2, d4qdeb2, d4qdec2, d4qded2
    automated match to d1st0a2
    protein/RNA complex; complexed with 30s, po4
  2. Domain d4qdeb1: 4qde B:40-145 [272664]
    Other proteins in same PDB: d4qdea2, d4qdeb2, d4qdec2, d4qded2
    automated match to d1st0a2
    protein/RNA complex; complexed with 30s, po4
  3. Domain d4qdec1: 4qde C:39-145 [272663]
    Other proteins in same PDB: d4qdea2, d4qdeb2, d4qdec2, d4qded2
    automated match to d1st0a2
    protein/RNA complex; complexed with 30s, po4
  4. Domain d4qded1: 4qde D:38-145 [272667]
    Other proteins in same PDB: d4qdea2, d4qdeb2, d4qdec2, d4qded2
    automated match to d1st0a2
    protein/RNA complex; complexed with 30s, po4
4. Domains for 4qdv:
  1. Domain d4qdva1: 4qdv A:40-145 [272940]
    Other proteins in same PDB: d4qdva2, d4qdvb2, d4qdvc2, d4qdvd2
    automated match to d1st0a2
    complexed with 30u, gol, po4
  2. Domain d4qdvb1: 4qdv B:40-145 [272945]
    Other proteins in same PDB: d4qdva2, d4qdvb2, d4qdvc2, d4qdvd2
    automated match to d1st0a2
    complexed with 30u, gol, po4
  3. Domain d4qdvc1: 4qdv C:39-145 [272947]
    Other proteins in same PDB: d4qdva2, d4qdvb2, d4qdvc2, d4qdvd2
    automated match to d1st0a2
    complexed with 30u, gol, po4
  4. Domain d4qdvd1: 4qdv D:38-145 [272949]
    Other proteins in same PDB: d4qdva2, d4qdvb2, d4qdvc2, d4qdvd2
    automated match to d1st0a2
    complexed with 30u, gol, po4
5. Domains for 5osy:
  1. Domain d5osya1: 5osy A:37-145 [351759]
    Other proteins in same PDB: d5osya2, d5osyb2
    automated match to d1st0a2
    protein/RNA complex; complexed with ajq, gol
  2. Domain d5osyb1: 5osy B:40-145 [351707]
    Other proteins in same PDB: d5osya2, d5osyb2
    automated match to d1st0a2
    protein/RNA complex; complexed with ajq, gol

More info for Protein automated matches from d.246.1.0: automated matches

Timeline for Protein automated matches from d.246.1.0: automated matches:

Protein automated matches from d.246.1.0: automated matches first appeared in SCOPe 2.04
Protein automated matches from d.246.1.0: automated matches appears in SCOPe 2.07