Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 3005156Fold d.185: LuxS/MPP-like metallohydrolase [63410] (1 superfamily)
    core: beta-alpha-beta(2)-alpha(2); 2 layers: alpha/beta
  4. 3005157Superfamily d.185.1: LuxS/MPP-like metallohydrolase [63411] (3 families) (S)
    Share the same "active site motif" HxxEH located in the first core helix, but differ in one of the zinc-binding residues
  5. 3005158Family d.185.1.1: MPP-like [63412] (7 proteins)
    Common fold elaborated with many additional structures; duplication: each family member consists of two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)-beta structure, but only the N-terminal domain of MPP beta chain binds the catalytic metal
  6. 3005400Protein automated matches [254430] (2 species)
    not a true protein

Species:

  1. 3005401Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [257462] (3 PDB entries)
    1. Domains for 4pd4:
      1. 3005414Domain d4pd4a1: 4pd4 A:27-239 [257463]
        Other proteins in same PDB: d4pd4c1, d4pd4c2, d4pd4d1, d4pd4d2, d4pd4e1, d4pd4e2, d4pd4f_, d4pd4g_, d4pd4h_, d4pd4i_, d4pd4j_, d4pd4k_
        automated match to d3cx5a1
        complexed with 3pe, 3ph, aoq, fes, hem, umq, uq6
      2. 3005415Domain d4pd4a2: 4pd4 A:240-457 [257464]
        Other proteins in same PDB: d4pd4c1, d4pd4c2, d4pd4d1, d4pd4d2, d4pd4e1, d4pd4e2, d4pd4f_, d4pd4g_, d4pd4h_, d4pd4i_, d4pd4j_, d4pd4k_
        automated match to d3cx5a2
        complexed with 3pe, 3ph, aoq, fes, hem, umq, uq6
      3. 3005416Domain d4pd4b1: 4pd4 B:17-218 [257465]
        Other proteins in same PDB: d4pd4c1, d4pd4c2, d4pd4d1, d4pd4d2, d4pd4e1, d4pd4e2, d4pd4f_, d4pd4g_, d4pd4h_, d4pd4i_, d4pd4j_, d4pd4k_
        automated match to d3cx5b1
        complexed with 3pe, 3ph, aoq, fes, hem, umq, uq6
      4. 3005417Domain d4pd4b2: 4pd4 B:219-368 [257466]
        Other proteins in same PDB: d4pd4c1, d4pd4c2, d4pd4d1, d4pd4d2, d4pd4e1, d4pd4e2, d4pd4f_, d4pd4g_, d4pd4h_, d4pd4i_, d4pd4j_, d4pd4k_
        automated match to d3cx5b2
        complexed with 3pe, 3ph, aoq, fes, hem, umq, uq6
    2. Domains for 6t0b:
      1. 3005410Domain d6t0ba1: 6t0b A:27-239 [384213]
        Other proteins in same PDB: d6t0bb1, d6t0bb2, d6t0bc1, d6t0bc2, d6t0bd1, d6t0bd2, d6t0be1, d6t0be2, d6t0bf_, d6t0bg_, d6t0bh_, d6t0bi_, d6t0bj_, d6t0bm1, d6t0bm2, d6t0bn1, d6t0bn2, d6t0bo1, d6t0bo2, d6t0bp1, d6t0bp2, d6t0bq_, d6t0br_, d6t0bs_, d6t0bt_, d6t0bw_
        automated match to d3cx5a1
        complexed with ca, cdl, cu, cua, fes, hea, hec, hem, mg, pcf, pef, zn
      2. 3005411Domain d6t0ba2: 6t0b A:240-457 [384214]
        Other proteins in same PDB: d6t0bb1, d6t0bb2, d6t0bc1, d6t0bc2, d6t0bd1, d6t0bd2, d6t0be1, d6t0be2, d6t0bf_, d6t0bg_, d6t0bh_, d6t0bi_, d6t0bj_, d6t0bm1, d6t0bm2, d6t0bn1, d6t0bn2, d6t0bo1, d6t0bo2, d6t0bp1, d6t0bp2, d6t0bq_, d6t0br_, d6t0bs_, d6t0bt_, d6t0bw_
        automated match to d3cx5a2
        complexed with ca, cdl, cu, cua, fes, hea, hec, hem, mg, pcf, pef, zn
      3. 3005412Domain d6t0bl1: 6t0b L:27-239 [384578]
        Other proteins in same PDB: d6t0bb1, d6t0bb2, d6t0bc1, d6t0bc2, d6t0bd1, d6t0bd2, d6t0be1, d6t0be2, d6t0bf_, d6t0bg_, d6t0bh_, d6t0bi_, d6t0bj_, d6t0bm1, d6t0bm2, d6t0bn1, d6t0bn2, d6t0bo1, d6t0bo2, d6t0bp1, d6t0bp2, d6t0bq_, d6t0br_, d6t0bs_, d6t0bt_, d6t0bw_
        automated match to d3cx5a1
        complexed with ca, cdl, cu, cua, fes, hea, hec, hem, mg, pcf, pef, zn
      4. 3005413Domain d6t0bl2: 6t0b L:240-457 [384579]
        Other proteins in same PDB: d6t0bb1, d6t0bb2, d6t0bc1, d6t0bc2, d6t0bd1, d6t0bd2, d6t0be1, d6t0be2, d6t0bf_, d6t0bg_, d6t0bh_, d6t0bi_, d6t0bj_, d6t0bm1, d6t0bm2, d6t0bn1, d6t0bn2, d6t0bo1, d6t0bo2, d6t0bp1, d6t0bp2, d6t0bq_, d6t0br_, d6t0bs_, d6t0bt_, d6t0bw_
        automated match to d3cx5a2
        complexed with ca, cdl, cu, cua, fes, hea, hec, hem, mg, pcf, pef, zn
    3. Domains for 6ymx:
      1. 3005402Domain d6ymxa1: 6ymx A:27-239 [393684]
        Other proteins in same PDB: d6ymxc_, d6ymxd1, d6ymxd2, d6ymxe1, d6ymxe2, d6ymxf_, d6ymxg_, d6ymxh_, d6ymxi_, d6ymxj_, d6ymxn1, d6ymxn2, d6ymxo1, d6ymxo2, d6ymxp1, d6ymxp2, d6ymxq_, d6ymxr_, d6ymxs_, d6ymxt_
        automated match to d3cx5a1
        complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, cu, cua, fes, hea, hem, pcf, pty, uq6, zn
      2. 3005403Domain d6ymxa2: 6ymx A:240-457 [393685]
        Other proteins in same PDB: d6ymxc_, d6ymxd1, d6ymxd2, d6ymxe1, d6ymxe2, d6ymxf_, d6ymxg_, d6ymxh_, d6ymxi_, d6ymxj_, d6ymxn1, d6ymxn2, d6ymxo1, d6ymxo2, d6ymxp1, d6ymxp2, d6ymxq_, d6ymxr_, d6ymxs_, d6ymxt_
        automated match to d3cx5a2
        complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, cu, cua, fes, hea, hem, pcf, pty, uq6, zn
      3. 3005404Domain d6ymxb1: 6ymx B:17-218 [393720]
        Other proteins in same PDB: d6ymxc_, d6ymxd1, d6ymxd2, d6ymxe1, d6ymxe2, d6ymxf_, d6ymxg_, d6ymxh_, d6ymxi_, d6ymxj_, d6ymxn1, d6ymxn2, d6ymxo1, d6ymxo2, d6ymxp1, d6ymxp2, d6ymxq_, d6ymxr_, d6ymxs_, d6ymxt_
        automated match to d3cx5b1
        complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, cu, cua, fes, hea, hem, pcf, pty, uq6, zn
      4. 3005405Domain d6ymxb2: 6ymx B:219-368 [393721]
        Other proteins in same PDB: d6ymxc_, d6ymxd1, d6ymxd2, d6ymxe1, d6ymxe2, d6ymxf_, d6ymxg_, d6ymxh_, d6ymxi_, d6ymxj_, d6ymxn1, d6ymxn2, d6ymxo1, d6ymxo2, d6ymxp1, d6ymxp2, d6ymxq_, d6ymxr_, d6ymxs_, d6ymxt_
        automated match to d3cx5b2
        complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, cu, cua, fes, hea, hem, pcf, pty, uq6, zn
      5. 3005406Domain d6ymxl1: 6ymx L:27-239 [393761]
        Other proteins in same PDB: d6ymxc_, d6ymxd1, d6ymxd2, d6ymxe1, d6ymxe2, d6ymxf_, d6ymxg_, d6ymxh_, d6ymxi_, d6ymxj_, d6ymxn1, d6ymxn2, d6ymxo1, d6ymxo2, d6ymxp1, d6ymxp2, d6ymxq_, d6ymxr_, d6ymxs_, d6ymxt_
        automated match to d3cx5a1
        complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, cu, cua, fes, hea, hem, pcf, pty, uq6, zn
      6. 3005407Domain d6ymxl2: 6ymx L:240-457 [393762]
        Other proteins in same PDB: d6ymxc_, d6ymxd1, d6ymxd2, d6ymxe1, d6ymxe2, d6ymxf_, d6ymxg_, d6ymxh_, d6ymxi_, d6ymxj_, d6ymxn1, d6ymxn2, d6ymxo1, d6ymxo2, d6ymxp1, d6ymxp2, d6ymxq_, d6ymxr_, d6ymxs_, d6ymxt_
        automated match to d3cx5a2
        complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, cu, cua, fes, hea, hem, pcf, pty, uq6, zn
      7. 3005408Domain d6ymxm1: 6ymx M:17-218 [393722]
        Other proteins in same PDB: d6ymxc_, d6ymxd1, d6ymxd2, d6ymxe1, d6ymxe2, d6ymxf_, d6ymxg_, d6ymxh_, d6ymxi_, d6ymxj_, d6ymxn1, d6ymxn2, d6ymxo1, d6ymxo2, d6ymxp1, d6ymxp2, d6ymxq_, d6ymxr_, d6ymxs_, d6ymxt_
        automated match to d3cx5b1
        complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, cu, cua, fes, hea, hem, pcf, pty, uq6, zn
      8. 3005409Domain d6ymxm2: 6ymx M:219-368 [393723]
        Other proteins in same PDB: d6ymxc_, d6ymxd1, d6ymxd2, d6ymxe1, d6ymxe2, d6ymxf_, d6ymxg_, d6ymxh_, d6ymxi_, d6ymxj_, d6ymxn1, d6ymxn2, d6ymxo1, d6ymxo2, d6ymxp1, d6ymxp2, d6ymxq_, d6ymxr_, d6ymxs_, d6ymxt_
        automated match to d3cx5b2
        complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, cu, cua, fes, hea, hem, pcf, pty, uq6, zn
  2. 3005418Cow (Bos taurus) [TaxId:9913] [254891] (2 PDB entries)
    1. Domains for 1sqq:
      1. 3005419Domain d1sqqa1: 1sqq A:1-233 [119007]
        Other proteins in same PDB: d1sqqb2, d1sqqc1, d1sqqc2, d1sqqd1, d1sqqd2, d1sqqe1, d1sqqe2, d1sqqf1, d1sqqg_, d1sqqh_, d1sqqi_, d1sqqj_, d1sqqk1
        automated match to d2a06a1
        complexed with fes, hec, ost, uq2
      2. 3005420Domain d1sqqa2: 1sqq A:234-446 [119008]
        Other proteins in same PDB: d1sqqb2, d1sqqc1, d1sqqc2, d1sqqd1, d1sqqd2, d1sqqe1, d1sqqe2, d1sqqf1, d1sqqg_, d1sqqh_, d1sqqi_, d1sqqj_, d1sqqk1
        automated match to d2fyua2
        complexed with fes, hec, ost, uq2
      3. 3005421Domain d1sqqb1: 1sqq B:17-235 [119009]
        Other proteins in same PDB: d1sqqb2, d1sqqc1, d1sqqc2, d1sqqd1, d1sqqd2, d1sqqe1, d1sqqe2, d1sqqf1, d1sqqg_, d1sqqh_, d1sqqi_, d1sqqj_, d1sqqk1
        automated match to d1bccb1
        complexed with fes, hec, ost, uq2
    2. Domains for 5okd:
      1. 3005422Domain d5okda1: 5okd A:2-233 [347209]
        Other proteins in same PDB: d5okdb2, d5okdc1, d5okdc2, d5okdd1, d5okdd2, d5okde1, d5okde2, d5okdg_, d5okdh_, d5okdi_, d5okdj_
        automated match to d2a06a1
        complexed with 6pe, 9xe, cdl, fes, hec, hem, lmt, pee, pg4, po4, px4
      2. 3005423Domain d5okda2: 5okd A:234-446 [347210]
        Other proteins in same PDB: d5okdb2, d5okdc1, d5okdc2, d5okdd1, d5okdd2, d5okde1, d5okde2, d5okdg_, d5okdh_, d5okdi_, d5okdj_
        automated match to d2fyua2
        complexed with 6pe, 9xe, cdl, fes, hec, hem, lmt, pee, pg4, po4, px4
      3. 3005424Domain d5okdb1: 5okd B:20-235 [347220]
        Other proteins in same PDB: d5okdb2, d5okdc1, d5okdc2, d5okdd1, d5okdd2, d5okde1, d5okde2, d5okdg_, d5okdh_, d5okdi_, d5okdj_
        automated match to d1bccb1
        complexed with 6pe, 9xe, cdl, fes, hec, hem, lmt, pee, pg4, po4, px4

More info for Protein automated matches from d.185.1.1: MPP-like

Timeline for Protein automated matches from d.185.1.1: MPP-like: