Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2054994Fold b.44: Elongation factor/aminomethyltransferase common domain [50464] (2 superfamilies)
    barrel, closed; n=6, S=10; greek-key
  4. 2054995Superfamily b.44.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain [50465] (2 families) (S)
    probably related to the second domain and its superfamiy by a circular permutation
  5. 2055099Family b.44.1.0: automated matches [254194] (1 protein)
    not a true family
  6. 2055100Protein automated matches [254425] (15 species)
    not a true protein

Species:

  1. 2055101Aeropyrum pernix [TaxId:272557] [256139] (2 PDB entries)
    1. Domain for 3vmf:
    2. Domain for 3wxm:
  2. 2055104Aeropyrum pernix [TaxId:56636] [255748] (2 PDB entries)
    1. Domains for 3agj:
      1. 2055108Domain d3agja6: 3agj A:323-435 [304953]
        Other proteins in same PDB: d3agja4, d3agja5, d3agjc4, d3agjc5, d3agje4, d3agje5, d3agjg4, d3agjg5
        automated match to d3wxme3
        complexed with gtp, mg
      2. 2055109Domain d3agjc6: 3agj C:323-434 [304956]
        Other proteins in same PDB: d3agja4, d3agja5, d3agjc4, d3agjc5, d3agje4, d3agje5, d3agjg4, d3agjg5
        automated match to d3wxme3
        complexed with gtp, mg
      3. 2055110Domain d3agje6: 3agj E:323-432 [304959]
        Other proteins in same PDB: d3agja4, d3agja5, d3agjc4, d3agjc5, d3agje4, d3agje5, d3agjg4, d3agjg5
        automated match to d3wxme3
        complexed with gtp, mg
      4. 2055111Domain d3agjg6: 3agj G:323-434 [304962]
        Other proteins in same PDB: d3agja4, d3agja5, d3agjc4, d3agjc5, d3agje4, d3agje5, d3agjg4, d3agjg5
        automated match to d3wxme3
        complexed with gtp, mg
    2. Domains for 3wxm:
      1. 2055105Domain d3wxmc3: 3wxm C:323-434 [262483]
        Other proteins in same PDB: d3wxma1, d3wxma2, d3wxmc1, d3wxmc2, d3wxme1, d3wxme2, d3wxmg1, d3wxmg2
        protein/RNA complex; complexed with gtp, mg
      2. 2055106Domain d3wxme3: 3wxm E:323-432 [262486]
        Other proteins in same PDB: d3wxma1, d3wxma2, d3wxmc1, d3wxmc2, d3wxme1, d3wxme2, d3wxmg1, d3wxmg2
        protein/RNA complex; complexed with gtp, mg
      3. 2055107Domain d3wxmg3: 3wxm G:323-434 [262489]
        Other proteins in same PDB: d3wxma1, d3wxma2, d3wxmc1, d3wxmc2, d3wxme1, d3wxme2, d3wxmg1, d3wxmg2
        protein/RNA complex; complexed with gtp, mg
  3. 2055112Escherichia coli K-12 [TaxId:83333] [256112] (3 PDB entries)
    1. Domain for 3u2q:
    2. Domains for 3u6b:
      1. 2055113Domain d3u6ba3: 3u6b A:297-393 [250089]
        Other proteins in same PDB: d3u6ba1, d3u6ba2, d3u6bb1, d3u6bb2
        automated match to d1d8ta2
        complexed with gdp, mg
      2. 2055114Domain d3u6bb3: 3u6b B:297-393 [250092]
        Other proteins in same PDB: d3u6ba1, d3u6ba2, d3u6bb1, d3u6bb2
        automated match to d1d8ta2
        complexed with gdp, mg
    3. Domains for 3u6k:
      1. 2055115Domain d3u6ka3: 3u6k A:297-393 [250097]
        Other proteins in same PDB: d3u6ka1, d3u6ka2, d3u6kb1, d3u6kb2
        automated match to d1d8ta2
        complexed with gdp, mg
      2. 2055116Domain d3u6kb3: 3u6k B:297-393 [250100]
        Other proteins in same PDB: d3u6ka1, d3u6ka2, d3u6kb1, d3u6kb2
        automated match to d1d8ta2
        complexed with gdp, mg
  4. 2055118Escherichia coli [TaxId:316385] [272317] (3 PDB entries)
    1. Domains for 4pc1:
      1. 2055119Domain d4pc1a3: 4pc1 A:297-393 [272327]
        Other proteins in same PDB: d4pc1a1, d4pc1a2, d4pc1b1, d4pc1b2, d4pc1c1, d4pc1c2, d4pc1c3, d4pc1d1, d4pc1d2, d4pc1d3
        automated match to d1d8ta2
        complexed with gol, pb, po4, trs
      2. 2055120Domain d4pc1b3: 4pc1 B:297-393 [272324]
        Other proteins in same PDB: d4pc1a1, d4pc1a2, d4pc1b1, d4pc1b2, d4pc1c1, d4pc1c2, d4pc1c3, d4pc1d1, d4pc1d2, d4pc1d3
        automated match to d1d8ta2
        complexed with gol, pb, po4, trs
    2. Domains for 4pc2:
      1. 2055123Domain d4pc2a3: 4pc2 A:297-393 [272341]
        Other proteins in same PDB: d4pc2a1, d4pc2a2, d4pc2b1, d4pc2b2, d4pc2c1, d4pc2c2, d4pc2c3, d4pc2d1, d4pc2d2, d4pc2d3
        automated match to d1d8ta2
        complexed with cl, gdp, gol
      2. 2055124Domain d4pc2b3: 4pc2 B:297-393 [272344]
        Other proteins in same PDB: d4pc2a1, d4pc2a2, d4pc2b1, d4pc2b2, d4pc2c1, d4pc2c2, d4pc2c3, d4pc2d1, d4pc2d2, d4pc2d3
        automated match to d1d8ta2
        complexed with cl, gdp, gol
    3. Domains for 4pc6:
      1. 2055121Domain d4pc6a3: 4pc6 A:297-393 [272330]
        Other proteins in same PDB: d4pc6a1, d4pc6a2, d4pc6b1, d4pc6b2, d4pc6c1, d4pc6c2, d4pc6c3, d4pc6d1, d4pc6d2, d4pc6d3
        automated match to d1d8ta2
        complexed with gnp, gol
      2. 2055122Domain d4pc6b3: 4pc6 B:297-393 [272318]
        Other proteins in same PDB: d4pc6a1, d4pc6a2, d4pc6b1, d4pc6b2, d4pc6c1, d4pc6c2, d4pc6c3, d4pc6d1, d4pc6d2, d4pc6d3
        automated match to d1d8ta2
        complexed with gnp, gol
  5. 2055125Escherichia coli [TaxId:469008] [257411] (1 PDB entry)
  6. 2055127Escherichia coli [TaxId:83333] [272305] (1 PDB entry)
  7. 2055130Methanococcus maripaludis [TaxId:39152] [311185] (2 PDB entries)
    1. Domains for 1wb1:
      1. 2055131Domain d1wb1a7: 1wb1 A:272-387 [303263]
        Other proteins in same PDB: d1wb1a5, d1wb1a6, d1wb1a8, d1wb1a9, d1wb1b4, d1wb1b5, d1wb1c5, d1wb1c6, d1wb1c8, d1wb1c9, d1wb1d4, d1wb1d5
        automated match to d4ac9a3
        complexed with dxc, gdp, mg, so4
      2. 2055132Domain d1wb1b6: 1wb1 B:272-389 [303268]
        Other proteins in same PDB: d1wb1a5, d1wb1a6, d1wb1a8, d1wb1a9, d1wb1b4, d1wb1b5, d1wb1c5, d1wb1c6, d1wb1c8, d1wb1c9, d1wb1d4, d1wb1d5
        automated match to d4ac9a3
        complexed with dxc, gdp, mg, so4
      3. 2055133Domain d1wb1c7: 1wb1 C:272-387 [303271]
        Other proteins in same PDB: d1wb1a5, d1wb1a6, d1wb1a8, d1wb1a9, d1wb1b4, d1wb1b5, d1wb1c5, d1wb1c6, d1wb1c8, d1wb1c9, d1wb1d4, d1wb1d5
        automated match to d4ac9a3
        complexed with dxc, gdp, mg, so4
      4. 2055134Domain d1wb1d6: 1wb1 D:272-388 [303276]
        Other proteins in same PDB: d1wb1a5, d1wb1a6, d1wb1a8, d1wb1a9, d1wb1b4, d1wb1b5, d1wb1c5, d1wb1c6, d1wb1c8, d1wb1c9, d1wb1d4, d1wb1d5
        automated match to d4ac9a3
        complexed with dxc, gdp, mg, so4
    2. Domains for 1wb2:
      1. 2055135Domain d1wb2a7: 1wb2 A:272-387 [303279]
        Other proteins in same PDB: d1wb2a5, d1wb2a6, d1wb2a8, d1wb2a9, d1wb2b4, d1wb2b5, d1wb2c5, d1wb2c6, d1wb2c8, d1wb2c9, d1wb2d4, d1wb2d5
        automated match to d4ac9a3
        complexed with dxc, so4
      2. 2055136Domain d1wb2b6: 1wb2 B:272-389 [303284]
        Other proteins in same PDB: d1wb2a5, d1wb2a6, d1wb2a8, d1wb2a9, d1wb2b4, d1wb2b5, d1wb2c5, d1wb2c6, d1wb2c8, d1wb2c9, d1wb2d4, d1wb2d5
        automated match to d4ac9a3
        complexed with dxc, so4
      3. 2055137Domain d1wb2c7: 1wb2 C:272-387 [303287]
        Other proteins in same PDB: d1wb2a5, d1wb2a6, d1wb2a8, d1wb2a9, d1wb2b4, d1wb2b5, d1wb2c5, d1wb2c6, d1wb2c8, d1wb2c9, d1wb2d4, d1wb2d5
        automated match to d4ac9a3
        complexed with dxc, so4
      4. 2055138Domain d1wb2d6: 1wb2 D:272-388 [303292]
        Other proteins in same PDB: d1wb2a5, d1wb2a6, d1wb2a8, d1wb2a9, d1wb2b4, d1wb2b5, d1wb2c5, d1wb2c6, d1wb2c8, d1wb2c9, d1wb2d4, d1wb2d5
        automated match to d4ac9a3
        complexed with dxc, so4
  8. 2055139Pseudomonas putida [TaxId:160488] [256313] (2 PDB entries)
    1. Domains for 4iw3:
      1. 2055145Domain d4iw3b3: 4iw3 B:305-397 [252734]
        Other proteins in same PDB: d4iw3a_, d4iw3b1, d4iw3b2, d4iw3j_, d4iw3k1, d4iw3k2
        automated match to d1b23p2
        complexed with gdp, mg, mn, oga
      2. 2055146Domain d4iw3k3: 4iw3 K:305-397 [252737]
        Other proteins in same PDB: d4iw3a_, d4iw3b1, d4iw3b2, d4iw3j_, d4iw3k1, d4iw3k2
        automated match to d1b23p2
        complexed with gdp, mg, mn, oga
    2. Domains for 4j0q:
      1. 2055140Domain d4j0qa3: 4j0q A:305-397 [252783]
        Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
        automated match to d1b23p2
        complexed with gdp, mes, mg, mpd
      2. 2055141Domain d4j0qb3: 4j0q B:305-397 [252786]
        Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
        automated match to d1b23p2
        complexed with gdp, mes, mg, mpd
      3. 2055142Domain d4j0qc3: 4j0q C:305-397 [252789]
        Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
        automated match to d1b23p2
        complexed with gdp, mes, mg, mpd
      4. 2055143Domain d4j0qd3: 4j0q D:305-397 [252792]
        Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
        automated match to d1b23p2
        complexed with gdp, mes, mg, mpd
      5. 2055144Domain d4j0qe3: 4j0q E:305-397 [252795]
        Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
        automated match to d1b23p2
        complexed with gdp, mes, mg, mpd
  9. 2055147Pyrococcus horikoshii OT3 [TaxId:70601] [268115] (1 PDB entry)
  10. 2055149Rabbit (Oryctolagus cuniculus) [TaxId:9986] [259164] (1 PDB entry)
  11. 2055152Sulfolobus solfataricus [TaxId:2287] [255783] (5 PDB entries)
    1. Domains for 3cw2:
      1. 2055161Domain d3cw2a3: 3cw2 A:321-415 [239190]
        Other proteins in same PDB: d3cw2a1, d3cw2a2, d3cw2b1, d3cw2b2, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e2, d3cw2f1, d3cw2f2, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
        automated match to d2qn6a2
      2. 2055162Domain d3cw2b3: 3cw2 B:321-415 [239193]
        Other proteins in same PDB: d3cw2a1, d3cw2a2, d3cw2b1, d3cw2b2, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e2, d3cw2f1, d3cw2f2, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
        automated match to d2qn6a2
      3. 2055163Domain d3cw2e3: 3cw2 E:321-415 [239196]
        Other proteins in same PDB: d3cw2a1, d3cw2a2, d3cw2b1, d3cw2b2, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e2, d3cw2f1, d3cw2f2, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
        automated match to d2qn6a2
      4. 2055164Domain d3cw2f3: 3cw2 F:321-415 [239199]
        Other proteins in same PDB: d3cw2a1, d3cw2a2, d3cw2b1, d3cw2b2, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e2, d3cw2f1, d3cw2f2, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
        automated match to d2qn6a2
    2. Domains for 3p3m:
      1. 2055155Domain d3p3ma3: 3p3m A:321-415 [306208]
        Other proteins in same PDB: d3p3ma1, d3p3ma2, d3p3mb1, d3p3mb2, d3p3mc1, d3p3mc2, d3p3md1, d3p3md2, d3p3me1, d3p3me2, d3p3mf1, d3p3mf2
        automated match to d4m53a3
        complexed with gtp
      2. 2055156Domain d3p3mb3: 3p3m B:321-415 [306211]
        Other proteins in same PDB: d3p3ma1, d3p3ma2, d3p3mb1, d3p3mb2, d3p3mc1, d3p3mc2, d3p3md1, d3p3md2, d3p3me1, d3p3me2, d3p3mf1, d3p3mf2
        automated match to d4m53a3
        complexed with gtp
      3. 2055157Domain d3p3mc3: 3p3m C:321-415 [306214]
        Other proteins in same PDB: d3p3ma1, d3p3ma2, d3p3mb1, d3p3mb2, d3p3mc1, d3p3mc2, d3p3md1, d3p3md2, d3p3me1, d3p3me2, d3p3mf1, d3p3mf2
        automated match to d4m53a3
        complexed with gtp
      4. 2055158Domain d3p3md3: 3p3m D:321-415 [306217]
        Other proteins in same PDB: d3p3ma1, d3p3ma2, d3p3mb1, d3p3mb2, d3p3mc1, d3p3mc2, d3p3md1, d3p3md2, d3p3me1, d3p3me2, d3p3mf1, d3p3mf2
        automated match to d4m53a3
        complexed with gtp
      5. 2055159Domain d3p3me3: 3p3m E:321-415 [306220]
        Other proteins in same PDB: d3p3ma1, d3p3ma2, d3p3mb1, d3p3mb2, d3p3mc1, d3p3mc2, d3p3md1, d3p3md2, d3p3me1, d3p3me2, d3p3mf1, d3p3mf2
        automated match to d4m53a3
        complexed with gtp
      6. 2055160Domain d3p3mf3: 3p3m F:321-415 [306223]
        Other proteins in same PDB: d3p3ma1, d3p3ma2, d3p3mb1, d3p3mb2, d3p3mc1, d3p3mc2, d3p3md1, d3p3md2, d3p3me1, d3p3me2, d3p3mf1, d3p3mf2
        automated match to d4m53a3
        complexed with gtp
    3. Domain for 3pen:
    4. Domain for 4nbs:
    5. Domains for 5dsz:
      1. 2278401Domain d5dsza3: 5dsz A:321-415 [321702]
        Other proteins in same PDB: d5dsza1, d5dsza2, d5dszb1, d5dszb2
        automated match to d4m53a3
      2. 2278441Domain d5dszb3: 5dsz B:321-415 [321742]
        Other proteins in same PDB: d5dsza1, d5dsza2, d5dszb1, d5dszb2
        automated match to d4m53a3
  12. 2055165Sulfolobus solfataricus [TaxId:273057] [256085] (12 PDB entries)
    1. Domain for 3sjy:
    2. Domain for 3sjz:
    3. Domain for 4qfm:
    4. Domain for 4rcy:
    5. Domain for 4rcz:
    6. Domain for 4rd0:
    7. Domain for 4rd1:
    8. Domain for 4rd2:
    9. Domain for 4rd3:
    10. Domain for 4rd4:
    11. Domain for 4rd6:
    12. Domain for 4rjl:
  13. Thermus aquaticus [TaxId:271] [254882] (1 PDB entry)
  14. 2055182Thermus thermophilus HB8 [TaxId:300852] [255084] (2 PDB entries)
    1. Domain for 2c77:
    2. Domain for 2c78:
  15. 2055185Thermus thermophilus [TaxId:274] [256285] (6 PDB entries)
    1. Domain for 4h9g:
    2. Domain for 4lbv:
    3. Domain for 4lbw:
    4. Domain for 4lby:
    5. Domain for 4lbz:
    6. Domain for 4lc0:

More info for Protein automated matches from b.44.1.0: automated matches

Timeline for Protein automated matches from b.44.1.0: automated matches: