SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.44: Elongation factor/aminomethyltransferase common domain [50464] (2 superfamilies)
barrel, closed; n=6, S=10; greek-key
Superfamily b.44.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain [50465] (2 families)
probably related to the second domain and its superfamiy by a circular permutation
Family b.44.1.0: automated matches [254194] (1 protein)
not a true family
Protein automated matches [254425] (18 species)
not a true protein

Species:

Aeropyrum pernix [TaxId:272557] [256139] (2 PDB entries)

Domain for 3vmf:
- Domain d3vmfa3: 3vmf A:323-430 [250618]
  Other proteins in same PDB: d3vmfa1, d3vmfa2
  automated match to d1jnya2
  complexed with gtp, mg, so4

Domain for 3wxm:

Domain d3wxma3: 3wxm A:323-435 [259637]
Other proteins in same PDB: d3wxma1, d3wxma2, d3wxmc1, d3wxmc2, d3wxme1, d3wxme2, d3wxmg1, d3wxmg2
automated match to d3agje3
protein/RNA complex; complexed with gtp, mg

Aeropyrum pernix [TaxId:56636] [255748] (2 PDB entries)
1. Domains for 3agj:
  1. Domain d3agja6: 3agj A:323-435 [304953]
    Other proteins in same PDB: d3agja4, d3agja5, d3agjc4, d3agjc5, d3agje4, d3agje5, d3agjg4, d3agjg5
    automated match to d3wxme3
    complexed with gtp, mg
  2. Domain d3agjc6: 3agj C:323-434 [304956]
    Other proteins in same PDB: d3agja4, d3agja5, d3agjc4, d3agjc5, d3agje4, d3agje5, d3agjg4, d3agjg5
    automated match to d3wxme3
    complexed with gtp, mg
  3. Domain d3agje6: 3agj E:323-432 [304959]
    Other proteins in same PDB: d3agja4, d3agja5, d3agjc4, d3agjc5, d3agje4, d3agje5, d3agjg4, d3agjg5
    automated match to d3wxme3
    complexed with gtp, mg
  4. Domain d3agjg6: 3agj G:323-434 [304962]
    Other proteins in same PDB: d3agja4, d3agja5, d3agjc4, d3agjc5, d3agje4, d3agje5, d3agjg4, d3agjg5
    automated match to d3wxme3
    complexed with gtp, mg
2. Domains for 3wxm:
  1. Domain d3wxmc3: 3wxm C:323-434 [262483]
    Other proteins in same PDB: d3wxma1, d3wxma2, d3wxmc1, d3wxmc2, d3wxme1, d3wxme2, d3wxmg1, d3wxmg2
    protein/RNA complex; complexed with gtp, mg
  2. Domain d3wxme3: 3wxm E:323-432 [262486]
    Other proteins in same PDB: d3wxma1, d3wxma2, d3wxmc1, d3wxmc2, d3wxme1, d3wxme2, d3wxmg1, d3wxmg2
    protein/RNA complex; complexed with gtp, mg
  3. Domain d3wxmg3: 3wxm G:323-434 [262489]
    Other proteins in same PDB: d3wxma1, d3wxma2, d3wxmc1, d3wxmc2, d3wxme1, d3wxme2, d3wxmg1, d3wxmg2
    protein/RNA complex; complexed with gtp, mg
Escherichia coli K-12 [TaxId:83333] [256112] (3 PDB entries)
1. Domain for 3u2q:
  - Domain d3u2qa3: 3u2q A:297-393 [250074]
    Other proteins in same PDB: d3u2qa1, d3u2qa2
    automated match to d1d8ta2
    complexed with gdp, mg
2. Domains for 3u6b:
  1. Domain d3u6ba3: 3u6b A:297-393 [250089]
    Other proteins in same PDB: d3u6ba1, d3u6ba2, d3u6bb1, d3u6bb2
    automated match to d1d8ta2
    complexed with gdp, mg
  2. Domain d3u6bb3: 3u6b B:297-393 [250092]
    Other proteins in same PDB: d3u6ba1, d3u6ba2, d3u6bb1, d3u6bb2
    automated match to d1d8ta2
    complexed with gdp, mg
3. Domains for 3u6k:
  1. Domain d3u6ka3: 3u6k A:297-393 [250097]
    Other proteins in same PDB: d3u6ka1, d3u6ka2, d3u6kb1, d3u6kb2
    automated match to d1d8ta2
    complexed with gdp, mg
  2. Domain d3u6kb3: 3u6k B:297-393 [250100]
    Other proteins in same PDB: d3u6ka1, d3u6ka2, d3u6kb1, d3u6kb2
    automated match to d1d8ta2
    complexed with gdp, mg

Escherichia coli [TaxId:316385] [272317] (3 PDB entries)

Domains for 4pc1:

Domain d4pc1a3: 4pc1 A:297-393 [272327]
Other proteins in same PDB: d4pc1a1, d4pc1a2, d4pc1b1, d4pc1b2, d4pc1c1, d4pc1c2, d4pc1c3, d4pc1d1, d4pc1d2, d4pc1d3
automated match to d1d8ta2
complexed with gol, pb, po4, trs

Domain d4pc1b3: 4pc1 B:297-393 [272324]
Other proteins in same PDB: d4pc1a1, d4pc1a2, d4pc1b1, d4pc1b2, d4pc1c1, d4pc1c2, d4pc1c3, d4pc1d1, d4pc1d2, d4pc1d3
automated match to d1d8ta2
complexed with gol, pb, po4, trs

Domains for 4pc2:

Domain d4pc2a3: 4pc2 A:297-393 [272341]
Other proteins in same PDB: d4pc2a1, d4pc2a2, d4pc2b1, d4pc2b2, d4pc2c1, d4pc2c2, d4pc2c3, d4pc2d1, d4pc2d2, d4pc2d3
automated match to d1d8ta2
complexed with cl, gdp, gol

Domain d4pc2b3: 4pc2 B:297-393 [272344]
Other proteins in same PDB: d4pc2a1, d4pc2a2, d4pc2b1, d4pc2b2, d4pc2c1, d4pc2c2, d4pc2c3, d4pc2d1, d4pc2d2, d4pc2d3
automated match to d1d8ta2
complexed with cl, gdp, gol

Domains for 4pc6:

Domain d4pc6a3: 4pc6 A:297-393 [272330]
Other proteins in same PDB: d4pc6a1, d4pc6a2, d4pc6b1, d4pc6b2, d4pc6c1, d4pc6c2, d4pc6c3, d4pc6d1, d4pc6d2, d4pc6d3
automated match to d1d8ta2
complexed with gnp, gol

Domain d4pc6b3: 4pc6 B:297-393 [272318]
Other proteins in same PDB: d4pc6a1, d4pc6a2, d4pc6b1, d4pc6b2, d4pc6c1, d4pc6c2, d4pc6c3, d4pc6d1, d4pc6d2, d4pc6d3
automated match to d1d8ta2
complexed with gnp, gol

Escherichia coli [TaxId:331112] [343073] (2 PDB entries)
1. Domains for 5mi3:
  1. Domain d5mi3a3: 5mi3 A:298-394 [343119]
    Other proteins in same PDB: d5mi3a1, d5mi3a2, d5mi3b1, d5mi3b2
    automated match to d1d8ta2
    complexed with gdp, mg
  2. Domain d5mi3b3: 5mi3 B:298-394 [343074]
    Other proteins in same PDB: d5mi3a1, d5mi3a2, d5mi3b1, d5mi3b2
    automated match to d1d8ta2
    complexed with gdp, mg
2. Domains for 5opd:
  1. Domain d5opda3: 5opd A:298-393 [356866]
    Other proteins in same PDB: d5opda1, d5opda2, d5opdb1, d5opdb2
    automated match to d1d8ta2
    complexed with gol, gtp, iod, mg, na
  2. Domain d5opdb3: 5opd B:298-393 [356932]
    Other proteins in same PDB: d5opda1, d5opda2, d5opdb1, d5opdb2
    automated match to d1d8ta2
    complexed with gol, gtp, iod, mg, na
Escherichia coli [TaxId:469008] [257411] (1 PDB entry)
- Domain for 4p3y:
  - Domain d4p3ya3: 4p3y A:298-394 [257412]
    Other proteins in same PDB: d4p3ya1, d4p3ya2, d4p3yb1, d4p3yb2
    automated match to d1d8ta2
    complexed with gdp, gol, mg

Escherichia coli [TaxId:83333] [272305] (1 PDB entry)

Domains for 4pc3:

Domain d4pc3a3: 4pc3 A:297-393 [272312]
Other proteins in same PDB: d4pc3a1, d4pc3a2, d4pc3b1, d4pc3b2, d4pc3c1, d4pc3c2, d4pc3c3, d4pc3d1, d4pc3d2, d4pc3d3
automated match to d1d8ta2
complexed with gdp, gol

Domain d4pc3b3: 4pc3 B:297-393 [272306]
Other proteins in same PDB: d4pc3a1, d4pc3a2, d4pc3b1, d4pc3b2, d4pc3c1, d4pc3c2, d4pc3c3, d4pc3d1, d4pc3d2, d4pc3d3
automated match to d1d8ta2
complexed with gdp, gol

Methanococcus maripaludis [TaxId:39152] [311185] (2 PDB entries)

Domains for 1wb1:

Domain d1wb1a7: 1wb1 A:272-387 [303263]
Other proteins in same PDB: d1wb1a5, d1wb1a6, d1wb1a8, d1wb1a9, d1wb1b4, d1wb1b5, d1wb1c5, d1wb1c6, d1wb1c8, d1wb1c9, d1wb1d4, d1wb1d5
automated match to d4ac9a3
complexed with dxc, gdp, mg, so4

Domain d1wb1b6: 1wb1 B:272-389 [303268]
Other proteins in same PDB: d1wb1a5, d1wb1a6, d1wb1a8, d1wb1a9, d1wb1b4, d1wb1b5, d1wb1c5, d1wb1c6, d1wb1c8, d1wb1c9, d1wb1d4, d1wb1d5
automated match to d4ac9a3
complexed with dxc, gdp, mg, so4

Domain d1wb1c7: 1wb1 C:272-387 [303271]
Other proteins in same PDB: d1wb1a5, d1wb1a6, d1wb1a8, d1wb1a9, d1wb1b4, d1wb1b5, d1wb1c5, d1wb1c6, d1wb1c8, d1wb1c9, d1wb1d4, d1wb1d5
automated match to d4ac9a3
complexed with dxc, gdp, mg, so4

Domain d1wb1d6: 1wb1 D:272-388 [303276]
Other proteins in same PDB: d1wb1a5, d1wb1a6, d1wb1a8, d1wb1a9, d1wb1b4, d1wb1b5, d1wb1c5, d1wb1c6, d1wb1c8, d1wb1c9, d1wb1d4, d1wb1d5
automated match to d4ac9a3
complexed with dxc, gdp, mg, so4

Domains for 1wb2:

Domain d1wb2a7: 1wb2 A:272-387 [303279]
Other proteins in same PDB: d1wb2a5, d1wb2a6, d1wb2a8, d1wb2a9, d1wb2b4, d1wb2b5, d1wb2c5, d1wb2c6, d1wb2c8, d1wb2c9, d1wb2d4, d1wb2d5
automated match to d4ac9a3
complexed with dxc, so4

Domain d1wb2b6: 1wb2 B:272-389 [303284]
Other proteins in same PDB: d1wb2a5, d1wb2a6, d1wb2a8, d1wb2a9, d1wb2b4, d1wb2b5, d1wb2c5, d1wb2c6, d1wb2c8, d1wb2c9, d1wb2d4, d1wb2d5
automated match to d4ac9a3
complexed with dxc, so4

Domain d1wb2c7: 1wb2 C:272-387 [303287]
Other proteins in same PDB: d1wb2a5, d1wb2a6, d1wb2a8, d1wb2a9, d1wb2b4, d1wb2b5, d1wb2c5, d1wb2c6, d1wb2c8, d1wb2c9, d1wb2d4, d1wb2d5
automated match to d4ac9a3
complexed with dxc, so4

Domain d1wb2d6: 1wb2 D:272-388 [303292]
Other proteins in same PDB: d1wb2a5, d1wb2a6, d1wb2a8, d1wb2a9, d1wb2b4, d1wb2b5, d1wb2c5, d1wb2c6, d1wb2c8, d1wb2c9, d1wb2d4, d1wb2d5
automated match to d4ac9a3
complexed with dxc, so4

Pseudomonas putida [TaxId:160488] [256313] (2 PDB entries)

Domains for 4iw3:
1. Domain d4iw3b3: 4iw3 B:305-397 [252734]
  Other proteins in same PDB: d4iw3a_, d4iw3b1, d4iw3b2, d4iw3j_, d4iw3k1, d4iw3k2
  automated match to d1b23p2
  complexed with gdp, mg, mn, oga
2. Domain d4iw3k3: 4iw3 K:305-397 [252737]
  Other proteins in same PDB: d4iw3a_, d4iw3b1, d4iw3b2, d4iw3j_, d4iw3k1, d4iw3k2
  automated match to d1b23p2
  complexed with gdp, mg, mn, oga

Domains for 4j0q:

Domain d4j0qa3: 4j0q A:305-397 [252783]
Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
automated match to d1b23p2
complexed with gdp, mes, mg, mpd

Domain d4j0qb3: 4j0q B:305-397 [252786]
Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
automated match to d1b23p2
complexed with gdp, mes, mg, mpd

Domain d4j0qc3: 4j0q C:305-397 [252789]
Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
automated match to d1b23p2
complexed with gdp, mes, mg, mpd

Domain d4j0qd3: 4j0q D:305-397 [252792]
Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
automated match to d1b23p2
complexed with gdp, mes, mg, mpd

Domain d4j0qe3: 4j0q E:305-397 [252795]
Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
automated match to d1b23p2
complexed with gdp, mes, mg, mpd

Pyrococcus horikoshii OT3 [TaxId:70601] [268115] (2 PDB entries)
1. Domain for 3wya:
  - Domain d3wyaa3: 3wya A:317-427 [268116]
    Other proteins in same PDB: d3wyaa1, d3wyaa2
    automated match to d3wxme3
    complexed with gdp
2. Domains for 7csl:
  1. Domain d7csla3: 7csl A:317-427 [404940]
    Other proteins in same PDB: d7csla1, d7csla2, d7cslb1, d7cslb2
    automated match to d3wyaa3
  2. Domain d7cslb3: 7csl B:317-427 [404907]
    Other proteins in same PDB: d7csla1, d7csla2, d7cslb1, d7cslb2
    automated match to d3wyaa3
Rabbit (Oryctolagus cuniculus) [TaxId:9986] [259164] (2 PDB entries)
1. Domains for 4c0s:
  1. Domain d4c0sa3: 4c0s A:337-455 [259167]
    Other proteins in same PDB: d4c0sa1, d4c0sa2, d4c0sb1, d4c0sb2
    automated match to d1f60a2
    complexed with gdp, mg
  2. Domain d4c0sb3: 4c0s B:337-445 [259166]
    Other proteins in same PDB: d4c0sa1, d4c0sa2, d4c0sb1, d4c0sb2
    automated match to d1f60a2
    complexed with gdp, mg
2. Domains for 6ra9:
  1. Domain d6ra9a3: 6ra9 A:337-454 [386889]
    Other proteins in same PDB: d6ra9a1, d6ra9a2, d6ra9b1, d6ra9b2
    automated match to d4c0sa3
    complexed with gdp, gol, gpe, pok, so4
  2. Domain d6ra9b3: 6ra9 B:337-461 [386928]
    Other proteins in same PDB: d6ra9a1, d6ra9a2, d6ra9b1, d6ra9b2
    automated match to d4c0sa3
    complexed with gdp, gol, gpe, pok, so4
Saccharolobus solfataricus [TaxId:2287] [385005] (2 PDB entries)
1. Domain for 6r8s:
  - Domain d6r8sa3: 6r8s A:321-415 [385030]
    Other proteins in same PDB: d6r8sa1, d6r8sa2
    automated match to d4m53a3
    complexed with fmt, gcp, mg
2. Domain for 6r8t:
  - Domain d6r8ta3: 6r8t A:321-415 [385006]
    Other proteins in same PDB: d6r8ta1, d6r8ta2
    automated match to d4m53a3
    complexed with fmt, gcp, mg, na

Sulfolobus solfataricus [TaxId:2287] [255783] (6 PDB entries)

Domains for 3cw2:

Domain d3cw2a3: 3cw2 A:321-415 [239190]
Other proteins in same PDB: d3cw2a1, d3cw2a2, d3cw2b1, d3cw2b2, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e2, d3cw2f1, d3cw2f2, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
automated match to d2qn6a2

Domain d3cw2b3: 3cw2 B:321-415 [239193]
Other proteins in same PDB: d3cw2a1, d3cw2a2, d3cw2b1, d3cw2b2, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e2, d3cw2f1, d3cw2f2, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
automated match to d2qn6a2

Domain d3cw2e3: 3cw2 E:321-415 [239196]
Other proteins in same PDB: d3cw2a1, d3cw2a2, d3cw2b1, d3cw2b2, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e2, d3cw2f1, d3cw2f2, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
automated match to d2qn6a2

Domain d3cw2f3: 3cw2 F:321-415 [239199]
Other proteins in same PDB: d3cw2a1, d3cw2a2, d3cw2b1, d3cw2b2, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e2, d3cw2f1, d3cw2f2, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
automated match to d2qn6a2

Domains for 3p3m:

Domain d3p3ma3: 3p3m A:321-415 [306208]
Other proteins in same PDB: d3p3ma1, d3p3ma2, d3p3mb1, d3p3mb2, d3p3mc1, d3p3mc2, d3p3md1, d3p3md2, d3p3me1, d3p3me2, d3p3mf1, d3p3mf2
automated match to d4m53a3
complexed with gtp

Domain d3p3mb3: 3p3m B:321-415 [306211]
Other proteins in same PDB: d3p3ma1, d3p3ma2, d3p3mb1, d3p3mb2, d3p3mc1, d3p3mc2, d3p3md1, d3p3md2, d3p3me1, d3p3me2, d3p3mf1, d3p3mf2
automated match to d4m53a3
complexed with gtp

Domain d3p3mc3: 3p3m C:321-415 [306214]
Other proteins in same PDB: d3p3ma1, d3p3ma2, d3p3mb1, d3p3mb2, d3p3mc1, d3p3mc2, d3p3md1, d3p3md2, d3p3me1, d3p3me2, d3p3mf1, d3p3mf2
automated match to d4m53a3
complexed with gtp

Domain d3p3md3: 3p3m D:321-415 [306217]
Other proteins in same PDB: d3p3ma1, d3p3ma2, d3p3mb1, d3p3mb2, d3p3mc1, d3p3mc2, d3p3md1, d3p3md2, d3p3me1, d3p3me2, d3p3mf1, d3p3mf2
automated match to d4m53a3
complexed with gtp

Domain d3p3me3: 3p3m E:321-415 [306220]
Other proteins in same PDB: d3p3ma1, d3p3ma2, d3p3mb1, d3p3mb2, d3p3mc1, d3p3mc2, d3p3md1, d3p3md2, d3p3me1, d3p3me2, d3p3mf1, d3p3mf2
automated match to d4m53a3
complexed with gtp

Domain d3p3mf3: 3p3m F:321-415 [306223]
Other proteins in same PDB: d3p3ma1, d3p3ma2, d3p3mb1, d3p3mb2, d3p3mc1, d3p3mc2, d3p3md1, d3p3md2, d3p3me1, d3p3me2, d3p3mf1, d3p3mf2
automated match to d4m53a3
complexed with gtp

Domain for 3pen:
- Domain d3pena3: 3pen A:321-415 [248474]
  Other proteins in same PDB: d3pena1, d3pena2
  automated match to d2qn6a2
  complexed with 5gp, gdp, mg
Domain for 4nbs:
- Domain d4nbsa3: 4nbs A:321-415 [260696]
  Other proteins in same PDB: d4nbsa1, d4nbsa2
  automated match to d2qn6a2
  protein/RNA complex; complexed with fmt, gcp, mg, na
Domains for 5dsz:
1. Domain d5dsza3: 5dsz A:321-415 [321702]
  Other proteins in same PDB: d5dsza1, d5dsza2, d5dszb1, d5dszb2
  automated match to d4m53a3
2. Domain d5dszb3: 5dsz B:321-415 [321742]
  Other proteins in same PDB: d5dsza1, d5dsza2, d5dszb1, d5dszb2
  automated match to d4m53a3
Domain for 6i5m:
- Domain d6i5ma3: 6i5m A:321-415 [361989]
  Other proteins in same PDB: d6i5ma1, d6i5ma2
  automated match to d4m53a3
  protein/RNA complex; complexed with fmt, gdp, mg, na

Sulfolobus solfataricus [TaxId:273057] [256085] (13 PDB entries)

Domain for 3sjy:
- Domain d3sjya3: 3sjy A:321-415 [306507]
  Other proteins in same PDB: d3sjya1, d3sjya2
  automated match to d4m53a3
  protein/RNA complex; complexed with bme, fmt, gcp, gdp, mg
Domain for 3sjz:
- Domain d3sjza3: 3sjz A:321-415 [249490]
  Other proteins in same PDB: d3sjza1, d3sjza2
  automated match to d2qn6a2
  protein/RNA complex; complexed with bme, gdp, gnp
Domain for 4qfm:
- Domain d4qfma3: 4qfm A:321-415 [273439]
  Other proteins in same PDB: d4qfma1, d4qfma2
  automated match to d4m53a3
  protein/RNA complex; complexed with fmt, gcp, mg, na
Domain for 4rcy:
- Domain d4rcya3: 4rcy A:321-415 [273172]
  Other proteins in same PDB: d4rcya1, d4rcya2
  automated match to d4m53a3
  complexed with gdp, gtp, mg, mpd
Domain for 4rcz:
- Domain d4rcza3: 4rcz A:321-415 [273169]
  Other proteins in same PDB: d4rcza1, d4rcza2
  automated match to d4m53a3
  complexed with gnp, mg, mpd
Domain for 4rd0:
- Domain d4rd0a3: 4rd0 A:321-415 [273160]
  Other proteins in same PDB: d4rd0a1, d4rd0a2
  automated match to d4m53a3
  complexed with cl, gdp, mg
Domain for 4rd1:
- Domain d4rd1a3: 4rd1 A:321-415 [273166]
  Other proteins in same PDB: d4rd1a1, d4rd1a2
  automated match to d4m53a3
  complexed with gdp, gtp, mg, mpd, po4
Domain for 4rd2:
- Domain d4rd2a3: 4rd2 A:321-415 [273163]
  Other proteins in same PDB: d4rd2a1, d4rd2a2
  automated match to d4m53a3
  complexed with gnp, mg, mpd
Domain for 4rd3:
- Domain d4rd3a3: 4rd3 A:321-415 [273157]
  Other proteins in same PDB: d4rd3a1, d4rd3a2
  automated match to d4m53a3
  complexed with gdp, mg, po4
Domain for 4rd4:
- Domain d4rd4a3: 4rd4 A:321-415 [273154]
  Other proteins in same PDB: d4rd4a1, d4rd4a2
  automated match to d4m53a3
  complexed with gnp, mg, mpd
Domain for 4rd6:
- Domain d4rd6a3: 4rd6 A:321-415 [275424]
  Other proteins in same PDB: d4rd6a1, d4rd6a2
  automated match to d4m53a3
  complexed with gdp, mg
Domain for 4rjl:
- Domain d4rjla3: 4rjl A:321-415 [279336]
  Other proteins in same PDB: d4rjla1, d4rjla2
  automated match to d4m53a3
  protein/RNA complex; complexed with 7pg, fmt, gcp, mg, na

Domains for 6h6k:

Domain d6h6ka3: 6h6k A:321-415 [367762]
Other proteins in same PDB: d6h6ka1, d6h6ka2, d6h6kb1, d6h6kb2, d6h6kc1, d6h6kc2, d6h6kd1, d6h6kd2, d6h6ke1, d6h6ke2
automated match to d4m53a3
complexed with edo, gcp, na; mutant

Domain d6h6kb3: 6h6k B:321-415 [367766]
Other proteins in same PDB: d6h6ka1, d6h6ka2, d6h6kb1, d6h6kb2, d6h6kc1, d6h6kc2, d6h6kd1, d6h6kd2, d6h6ke1, d6h6ke2
automated match to d4m53a3
complexed with edo, gcp, na; mutant

Domain d6h6kc3: 6h6k C:321-415 [367831]
Other proteins in same PDB: d6h6ka1, d6h6ka2, d6h6kb1, d6h6kb2, d6h6kc1, d6h6kc2, d6h6kd1, d6h6kd2, d6h6ke1, d6h6ke2
automated match to d4m53a3
complexed with edo, gcp, na; mutant

Domain d6h6kd3: 6h6k D:321-415 [367947]
Other proteins in same PDB: d6h6ka1, d6h6ka2, d6h6kb1, d6h6kb2, d6h6kc1, d6h6kc2, d6h6kd1, d6h6kd2, d6h6ke1, d6h6ke2
automated match to d4m53a3
complexed with edo, gcp, na; mutant

Domain d6h6ke3: 6h6k E:321-415 [367769]
Other proteins in same PDB: d6h6ka1, d6h6ka2, d6h6kb1, d6h6kb2, d6h6kc1, d6h6kc2, d6h6kd1, d6h6kd2, d6h6ke1, d6h6ke2
automated match to d4m53a3
complexed with edo, gcp, na; mutant

Thermotoga neapolitana [TaxId:309803] [351494] (1 PDB entry)

Domains for 5w75:

Domain d5w75a3: 5w75 A:302-394 [351613]
Other proteins in same PDB: d5w75a1, d5w75a2, d5w75a4, d5w75b1, d5w75b2, d5w75b4, d5w75c1, d5w75c2, d5w75c4, d5w75d1, d5w75d2, d5w75d4
automated match to d1b23p2
complexed with gdp, mg, so4

Domain d5w75b3: 5w75 B:302-394 [351510]
Other proteins in same PDB: d5w75a1, d5w75a2, d5w75a4, d5w75b1, d5w75b2, d5w75b4, d5w75c1, d5w75c2, d5w75c4, d5w75d1, d5w75d2, d5w75d4
automated match to d1b23p2
complexed with gdp, mg, so4

Domain d5w75c3: 5w75 C:302-394 [351506]
Other proteins in same PDB: d5w75a1, d5w75a2, d5w75a4, d5w75b1, d5w75b2, d5w75b4, d5w75c1, d5w75c2, d5w75c4, d5w75d1, d5w75d2, d5w75d4
automated match to d1b23p2
complexed with gdp, mg, so4

Domain d5w75d3: 5w75 D:302-394 [351495]
Other proteins in same PDB: d5w75a1, d5w75a2, d5w75a4, d5w75b1, d5w75b2, d5w75b4, d5w75c1, d5w75c2, d5w75c4, d5w75d1, d5w75d2, d5w75d4
automated match to d1b23p2
complexed with gdp, mg, so4

Thermus aquaticus [TaxId:271] [254882] (1 PDB entry)
- Domains for 1ob5:
  1. Domain d1ob5a2: 1ob5 A:313-405 [118692]
    Other proteins in same PDB: d1ob5a1, d1ob5a3, d1ob5c1, d1ob5c3, d1ob5e1, d1ob5e3
    automated match to d1b23p2
    protein/RNA complex; complexed with enx, gnp, mg
  2. Domain d1ob5c2: 1ob5 C:313-405 [118695]
    Other proteins in same PDB: d1ob5a1, d1ob5a3, d1ob5c1, d1ob5c3, d1ob5e1, d1ob5e3
    automated match to d1b23p2
    protein/RNA complex; complexed with enx, gnp, mg
  3. Domain d1ob5e2: 1ob5 E:313-405 [118698]
    Other proteins in same PDB: d1ob5a1, d1ob5a3, d1ob5c1, d1ob5c3, d1ob5e1, d1ob5e3
    automated match to d1b23p2
    protein/RNA complex; complexed with enx, gnp, mg
Thermus thermophilus HB8 [TaxId:300852] [255084] (2 PDB entries)
1. Domain for 2c77:
  - Domain d2c77a2: 2c77 A:313-405 [130035]
    Other proteins in same PDB: d2c77a1, d2c77a3
    automated match to d1b23p2
    complexed with gnp, mg, peg
2. Domain for 2c78:
  - Domain d2c78a2: 2c78 A:313-405 [130038]
    Other proteins in same PDB: d2c78a1, d2c78a3
    automated match to d1b23p2
    complexed with gnp, mg, pul
Thermus thermophilus [TaxId:274] [256285] (6 PDB entries)
1. Domain for 4h9g:
  - Domain d4h9ga3: 4h9g A:313-405 [252404]
    Other proteins in same PDB: d4h9ga1, d4h9ga2
    automated match to d1b23p2
    complexed with 14j, gnp, mg, nh4, so4
2. Domain for 4lbv:
  - Domain d4lbva3: 4lbv A:313-405 [253535]
    Other proteins in same PDB: d4lbva1, d4lbva2
    automated match to d1b23p2
    complexed with cl, gnp, mg, nh4, so4
3. Domain for 4lbw:
  - Domain d4lbwa3: 4lbw A:313-405 [253538]
    Other proteins in same PDB: d4lbwa1, d4lbwa2
    automated match to d1b23p2
    complexed with gnp, mg, nh4, so4
4. Domain for 4lby:
  - Domain d4lbya3: 4lby A:313-405 [253541]
    Other proteins in same PDB: d4lbya1, d4lbya2
    automated match to d1b23p2
    complexed with gnp, mg, nh4, so4
5. Domain for 4lbz:
  - Domain d4lbza3: 4lbz A:313-405 [253544]
    Other proteins in same PDB: d4lbza1, d4lbza2
    automated match to d1b23p2
    complexed with gnp, mg, nh4, so4
6. Domain for 4lc0:
  - Domain d4lc0a3: 4lc0 A:313-405 [253547]
    Other proteins in same PDB: d4lc0a1, d4lc0a2
    automated match to d1b23p2
    complexed with gnp, mg, nh4, so4

More info for Protein automated matches from b.44.1.0: automated matches

Timeline for Protein automated matches from b.44.1.0: automated matches:

Protein automated matches from b.44.1.0: automated matches first appeared in SCOPe 2.04
Protein automated matches from b.44.1.0: automated matches appears in SCOPe 2.07