Class b: All beta proteins [48724] (177 folds) |
Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies) one turn of helix is made by two pairs of antiparallel strands linked with short turns has appearance of a sandwich of distinct architecture and jelly-roll topology |
Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold |
Family b.82.2.14: Histone demethylase core [254153] (4 proteins) Jumonji domain; Pfam PF02375 (JmjN) and Pfam PF02373 (JmjC); relationship to FIH1 (b.82.2.6) described in PubMed 16983801 |
Protein JMJD2A core [254342] (1 species) |
Human (Homo sapiens) [TaxId:9606] [254775] (41 PDB entries) |
Domain d2gp3a_: 2gp3 A: [241943] automated match to d2gp5a_ complexed with fe2, zn |
Domain d2gp3b_: 2gp3 B: [241944] automated match to d2gp5a_ complexed with fe2, zn |
Domain d2gp5a_: 2gp5 A: [241945] complexed with akg, fe2, zn |
Domain d2gp5b_: 2gp5 B: [241946] complexed with akg, fe2, zn |
Domain d2oq7a_: 2oq7 A: [243356] automated match to d4bisa_ complexed with ni, oga, zn |
Domain d2oq7b_: 2oq7 B: [243357] automated match to d4bisa_ complexed with ni, oga, zn |
Domain d2p5ba_: 2p5b A: [243411] automated match to d2gp5a_ complexed with fe2, oga, oxy, zn |
Domain d2p5bb_: 2p5b B: [243412] automated match to d2gp5a_ complexed with fe2, oga, oxy, zn |
Domain d2vd7a_: 2vd7 A: [243859] automated match to d4bisa_ complexed with ni, pd2, zn |
Domain d2vd7b_: 2vd7 B: [243860] automated match to d4bisa_ complexed with ni, pd2, zn |
Domain d2wwja_: 2wwj A: [244349] automated match to d4bisa_ complexed with ni, y28, zn |
Domain d2wwjb_: 2wwj B: [244350] automated match to d4bisa_ complexed with ni, y28, zn |
Domain d2ybka_: 2ybk A: [244720] automated match to d4bisa_ complexed with 2hg, cl, ni, zn |
Domain d2ybkb_: 2ybk B: [244721] automated match to d4bisa_ complexed with 2hg, cl, ni, zn |
Domain d3njya_: 3njy A: [247954] automated match to d4bisa_ complexed with 8xq, ni, zn |
Domain d3njyb_: 3njy B: [247955] automated match to d4bisa_ complexed with 8xq, ni, zn |
Domain d3pdqa_: 3pdq A: [248469] automated match to d4bisa_ complexed with cl, kc6, na, ni, zn |
Domain d3pdqb_: 3pdq B: [248470] automated match to d4bisa_ complexed with cl, kc6, na, ni, zn |
Domain d3rvha_: 3rvh A: [249236] automated match to d4bisa_ complexed with gol, hq2, ni, zn |
Domain d3rvhb_: 3rvh B: [249237] automated match to d4bisa_ complexed with gol, hq2, ni, zn |
Domain d4ai9a_: 4ai9 A: [251039] automated match to d4bisa_ complexed with cl, dza, gol, ni, zn |
Domain d4ai9b_: 4ai9 B: [251040] automated match to d4bisa_ complexed with cl, dza, gol, ni, zn |
Domain d4bisa_: 4bis A: [251263] complexed with 8hq, cl, gol, ni, zn |
Domain d4bisb_: 4bis B: [251264] complexed with 8hq, cl, gol, ni, zn |
Domain d4gd4a_: 4gd4 A: [252204] automated match to d4bisa_ complexed with 0ws, cl, ni, zn |
Domain d4gd4b_: 4gd4 B: [252205] automated match to d4bisa_ complexed with 0ws, cl, ni, zn |
Domain d4uraa_: 4ura A: [273927] automated match to d4v2wb_ complexed with edo, lel, ni, so4, zn |
Domain d4urab_: 4ura B: [273928] automated match to d4v2wb_ complexed with edo, lel, ni, so4, zn |
Domain d4v2wa_: 4v2w A: [261305] automated match to d4bisa_ complexed with cl, gol, ni, oga, zn |
Domain d4v2wb_: 4v2w B: [261304] automated match to d4bisa_ complexed with cl, gol, ni, oga, zn |
Domain d5a7na_: 5a7n A: [280228] automated match to d4bisa_ complexed with edo, mn, so4, vao, zn |
Domain d5a7nb_: 5a7n B: [280229] automated match to d4bisa_ complexed with edo, mn, so4, vao, zn |
Domain d5a7pa_: 5a7p A: [280223] automated match to d4bisa_ complexed with 6z1, dms, edo, mn, so4, zn |
Domain d5a7pb_: 5a7p B: [280230] automated match to d4bisa_ complexed with 6z1, dms, edo, mn, so4, zn |
Domain d5a7qa_: 5a7q A: [280222] automated match to d4bisa_ complexed with cl, edo, kch, mn, zn |
Domain d5a7qb_: 5a7q B: [280226] automated match to d4bisa_ complexed with cl, edo, kch, mn, zn |
Domain d5a7sa_: 5a7s A: [280224] automated match to d4bisa_ complexed with dms, edo, mn, s2x, zn |
Domain d5a7sb_: 5a7s B: [280225] automated match to d4bisa_ complexed with dms, edo, mn, s2x, zn |
Domain d5a7wa_: 5a7w A: [280221] Other proteins in same PDB: d5a7wb_ automated match to d4bisa_ complexed with 35m, dms, edo, mn, so4, zn |
Domain d5a80a_: 5a80 A: [280231] automated match to d4bisa_ complexed with 9cj, edo, mn, so4, zn |
Domain d5a80b_: 5a80 B: [280232] automated match to d4bisa_ complexed with 9cj, edo, mn, so4, zn |
Domain d5anqa_: 5anq A: [312629] automated match to d4v2wb_ complexed with 5yq, cl, fe2, so4, zn |
Domain d5anqb_: 5anq B: [312927] automated match to d4v2wb_ complexed with 5yq, cl, fe2, so4, zn |
Domain d5f2sa_: 5f2s A: [313958] automated match to d4v2wb_ complexed with 5tz, cl, dms, edo, zn |
Domain d5f2sb_: 5f2s B: [313864] automated match to d4v2wb_ complexed with 5tz, cl, dms, edo, zn |
Domain d5f2sc_: 5f2s C: [313986] automated match to d4v2wb_ complexed with 5tz, cl, dms, edo, zn |
Domain d5f2sd_: 5f2s D: [313879] automated match to d4v2wb_ complexed with 5tz, cl, dms, edo, zn |
Domain d5f2wa_: 5f2w A: [313939] automated match to d4v2wb_ complexed with 5up, dms, edo, zn |
Domain d5f2wb_: 5f2w B: [313921] automated match to d4v2wb_ complexed with 5up, dms, edo, zn |
Domain d5f2wc_: 5f2w C: [313870] automated match to d4v2wb_ complexed with 5up, dms, edo, zn |
Domain d5f2wd_: 5f2w D: [313901] automated match to d4v2wb_ complexed with 5up, dms, edo, zn |
Domain d5f32a_: 5f32 A: [313911] automated match to d4v2wb_ complexed with 5v7, dms, edo, gol, zn |
Domain d5f32b_: 5f32 B: [313933] automated match to d4v2wb_ complexed with 5v7, dms, edo, gol, zn |
Domain d5f32c_: 5f32 C: [313900] automated match to d4v2wb_ complexed with 5v7, dms, edo, gol, zn |
Domain d5f32d_: 5f32 D: [313859] automated match to d4v2wb_ complexed with 5v7, dms, edo, gol, zn |
Domain d5f37a_: 5f37 A: [313842] automated match to d4v2wb_ complexed with dms, edo, n5j, zn |
Domain d5f37b_: 5f37 B: [313843] automated match to d4v2wb_ complexed with dms, edo, n5j, zn |
Domain d5f37c_: 5f37 C: [313874] automated match to d4v2wb_ complexed with dms, edo, n5j, zn |
Domain d5f37d_: 5f37 D: [313880] automated match to d4v2wb_ complexed with dms, edo, n5j, zn |
Domain d5f39a_: 5f39 A: [313857] automated match to d4v2wb_ complexed with 5ub, dms, zn |
Domain d5f39b_: 5f39 B: [313917] automated match to d4v2wb_ complexed with 5ub, dms, zn |
Domain d5f39c_: 5f39 C: [313854] automated match to d4v2wb_ complexed with 5ub, dms, zn |
Domain d5f39d_: 5f39 D: [313972] automated match to d4v2wb_ complexed with 5ub, dms, zn |
Domain d5f3ca_: 5f3c A: [313896] automated match to d4v2wb_ complexed with 5u8, cl, dms, gol, zn |
Domain d5f3cb_: 5f3c B: [313919] automated match to d4v2wb_ complexed with 5u8, cl, dms, gol, zn |
Domain d5f3cc_: 5f3c C: [313850] automated match to d4v2wb_ complexed with 5u8, cl, dms, gol, zn |
Domain d5f3cd_: 5f3c D: [313968] automated match to d4v2wb_ complexed with 5u8, cl, dms, gol, zn |
Domain d5f3ea_: 5f3e A: [313979] automated match to d4v2wb_ complexed with 5uo, dms, gol, zn |
Domain d5f3eb_: 5f3e B: [313989] automated match to d4v2wb_ complexed with 5uo, dms, gol, zn |
Domain d5f3ec_: 5f3e C: [313862] automated match to d4v2wb_ complexed with 5uo, dms, gol, zn |
Domain d5f3ed_: 5f3e D: [313925] automated match to d4v2wb_ complexed with 5uo, dms, gol, zn |
Domain d5f3ga_: 5f3g A: [313863] automated match to d4v2wb_ complexed with 5ul, cl, dms, zn |
Domain d5f3gb_: 5f3g B: [313926] automated match to d4v2wb_ complexed with 5ul, cl, dms, zn |
Domain d5f3gc_: 5f3g C: [313974] automated match to d4v2wb_ complexed with 5ul, cl, dms, zn |
Domain d5f3gd_: 5f3g D: [313865] automated match to d4v2wb_ complexed with 5ul, cl, dms, zn |
Domain d5f3ia_: 5f3i A: [313867] automated match to d4v2wb_ complexed with 5uj, cl, dms, gol, zn |
Domain d5f3ib_: 5f3i B: [313946] automated match to d4v2wb_ complexed with 5uj, cl, dms, gol, zn |
Domain d5f3ic_: 5f3i C: [313861] automated match to d4v2wb_ complexed with 5uj, cl, dms, gol, zn |
Domain d5f3id_: 5f3i D: [313964] automated match to d4v2wb_ complexed with 5uj, cl, dms, gol, zn |
Domain d5f5ia_: 5f5i A: [280148] automated match to d4v2wb_ complexed with 5v1, ni, so4, zn |
Domain d5f5ib_: 5f5i B: [280149] automated match to d4v2wb_ complexed with 5v1, ni, so4, zn |
Domain d5fpva_: 5fpv A: [280435] automated match to d4v2wb_ complexed with mmk, mn, ni, zn |
Domain d5fpvb_: 5fpv B: [280436] automated match to d4v2wb_ complexed with mmk, mn, ni, zn |
Domain d5fpvc_: 5fpv C: [280434] automated match to d4v2wb_ complexed with mmk, mn, ni, zn |
Domain d5fpvd_: 5fpv D: [280437] automated match to d4v2wb_ complexed with mmk, mn, ni, zn |
Domain d5fpve_: 5fpv E: [280439] automated match to d4v2wb_ complexed with mmk, mn, ni, zn |
Domain d5fpvf_: 5fpv F: [280438] automated match to d4v2wb_ complexed with mmk, mn, ni, zn |
Domain d5fpvg_: 5fpv G: [280441] automated match to d4v2wb_ complexed with mmk, mn, ni, zn |
Domain d5fpvh_: 5fpv H: [280440] automated match to d4v2wb_ complexed with mmk, mn, ni, zn |
Domain d5fy8a_: 5fy8 A: [314582] automated match to d4bisa_ complexed with dms, edo, n81, ni, zn |
Domain d5fy8b_: 5fy8 B: [314560] automated match to d4bisa_ complexed with dms, edo, n81, ni, zn |
Domain d5fyca_: 5fyc A: [314578] automated match to d4bisa_ complexed with edo, fum, ni, so4, zn |
Domain d5fycb_: 5fyc B: [314612] automated match to d4bisa_ complexed with edo, fum, ni, so4, zn |
Domain d5fyha_: 5fyh A: [314591] automated match to d4bisa_ complexed with edo, fum, mn, so4, zn |
Domain d5fyhb_: 5fyh B: [314619] automated match to d4bisa_ complexed with edo, fum, mn, so4, zn |
Domain d5fyia_: 5fyi A: [314621] automated match to d4bisa_ complexed with 1ka, dms, edo, ni, pyr, zn |
Domain d5fyib_: 5fyi B: [314628] automated match to d4bisa_ complexed with 1ka, dms, edo, ni, pyr, zn |
Domain d5tvra_: 5tvr A: [329324] automated match to d5f37b_ complexed with akg, ni, zn |
Domain d5tvrb_: 5tvr B: [329362] automated match to d5f37b_ complexed with akg, ni, zn |
Domain d5tvsa_: 5tvs A: [329316] automated match to d5f37b_ complexed with ni, zn |
Domain d5tvsb_: 5tvs B: [329371] automated match to d5f37b_ complexed with ni, zn |
Domain d5vgia_: 5vgi A: [339665] automated match to d4v2wb_ complexed with 9dj, ni, zn |
Domain d5vgib_: 5vgi B: [339662] automated match to d4v2wb_ complexed with 9dj, ni, zn |
Domain d5vgic_: 5vgi C: [339661] automated match to d4v2wb_ complexed with 9dj, ni, zn |
Domain d5vgid_: 5vgi D: [339675] automated match to d4v2wb_ complexed with 9dj, ni, zn |
Domain d5vmpa_: 5vmp A: [339672] automated match to d4v2wb_ complexed with 9fj, ni, zn |
Domain d5vmpb_: 5vmp B: [339673] automated match to d4v2wb_ complexed with 9fj, ni, zn |
Domain d5vmpc_: 5vmp C: [339678] automated match to d4v2wb_ complexed with 9fj, ni, zn |
Domain d5vmpd_: 5vmp D: [339674] automated match to d4v2wb_ complexed with 9fj, ni, zn |
Timeline for Protein JMJD2A core from b.82.2.14: Histone demethylase core: