SCOPe 2.04: Domain d4h3za_: 4h3z A:

Lineage for d4h3za_ (4h3z A:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.116: alpha/beta knot [75216] (1 superfamily)
   core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot

4. Superfamily c.116.1: alpha/beta knot [75217] (9 families)
   known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
   all known members have dimeric structures

5. Family c.116.1.0: automated matches [191557] (1 protein)
   not a true family

6. Protein automated matches [190961] (13 species)
   not a true protein

7. Species Burkholderia phymatum [TaxId:391038] [256282] (2 PDB entries)

8. Domain d4h3za_: 4h3z A: [252376]
   automated match to d1uala_
   complexed with cl, sah

Details for d4h3za_

PDB Entry: 4h3z, 2.15 Å

PDB Description: Crystal structure of a symmetric dimer of a tRNA (guanine-(N(1)-)-methyltransferase from Burkholderia phymatum bound to S-adenosyl homocystein in both half-sites

PDB Compounds: (A:) tRNA (guanine-N(1)-)-methyltransferase

SCOPe Domain Sequences for d4h3za_:

Sequence, based on SEQRES records:

>d4h3za_ c.116.1.0 (A:) automated matches {Burkholderia phymatum [TaxId: 391038]}
smqfdivtlfpdmfraltdwgitsraakqeryglrtwnprdfttdnyrtiddrpygggpg
mvmlarpledainaakaaqaeqgiggarvvmmspqgatlnhdkvmrfaaepglillcgry
eaidqrlidrvvdeevslgdfvlsggelpamalidavvrhlpgvlndaqsavqdsfvdgl
ldcphytrpeeydgvrvpdvllgghhaeieqwrrrealrntwlkrpdlivqarknkllsr
adeawlaslakdask

Sequence, based on observed residues (ATOM records):

>d4h3za_ c.116.1.0 (A:) automated matches {Burkholderia phymatum [TaxId: 391038]}
smqfdivtlfpdmfraltdwgitsraakqeryglrtwnprdfttdnyrtiddrpygggpg
mvmlarpledainaakaaqaeqgiggarvvmmspqgatlnhdkvmrfaaepglillcgry
eaidqrlidrvvdeevslgdfvlsggelpamalidavvrhlpgvlnqdsfvdglldcphy
trpeeydgvrvpdvllgghhaeieqwrrrealrntwlkrpdlivqarknkllsradeawl
aslakdask

Timeline for d4h3za_:

• d4h3za_ is new in SCOPe 2.04-stable
  
• d4h3za_ appears in SCOPe 2.05
  
• d4h3za_ appears in the current release, SCOPe 2.08, called d4h3za1