SCOPe 2.08: Domain d4gqhk1: 4gqh K:1-154

Lineage for d4gqhk1 (4gqh K:1-154)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.24: Four-helical up-and-down bundle [47161] (29 superfamilies)
   core: 4 helices; bundle, closed or partly opened, left-handed twist; up-and-down

4. Superfamily a.24.5: TMV-like viral coat proteins [47195] (1 family)
   automatically mapped to Pfam PF00721

5. Family a.24.5.1: TMV-like viral coat proteins [47196] (4 proteins)

6. Protein Tobacco mosaic virus coat protein [47197] (1 species)

7. Species Tobacco mosaic virus, vulgare strain [TaxId:12242] [47198] (8 PDB entries)

8. Domain d4gqhk1: 4gqh K:1-154 [252305]
   Other proteins in same PDB: d4gqha2, d4gqhb2, d4gqhc2, d4gqhd2, d4gqhe2, d4gqhf2, d4gqhg2, d4gqhh2, d4gqhi2, d4gqhj2, d4gqhk2, d4gqhl2, d4gqhm2, d4gqhn2, d4gqho2, d4gqhp2, d4gqhq2, d4gqhr2, d4gqhs2, d4gqht2, d4gqhu2, d4gqhv2, d4gqhw2, d4gqhx2, d4gqhy2, d4gqhz2
   automated match to d2tmvp_

Details for d4gqhk1

PDB Entry: 4gqh, 3.06 Å

PDB Description: The Conformations and Interactions of the Four-Layer Aggregate Revealed by X-ray Crystallography Diffraction Implied the Importance of Peptides at Opposite Ends in Their Assemblies

PDB Compounds: (K:) capsid protein

SCOPe Domain Sequences for d4gqhk1:

Sequence, based on SEQRES records:

>d4gqhk1 a.24.5.1 (K:1-154) Tobacco mosaic virus coat protein {Tobacco mosaic virus, vulgare strain [TaxId: 12242]}
sysittpsqfvflssawadpielinlctnalgnqfqtqqartvvqrqfsevwkpspqvtv
rfpdsdfkvyrynavldplvtallgafdtrnriievenqanpttaetldatrrvddatva
irsainnlivelirgtgsynrssfesssglvwts

Sequence, based on observed residues (ATOM records):

>d4gqhk1 a.24.5.1 (K:1-154) Tobacco mosaic virus coat protein {Tobacco mosaic virus, vulgare strain [TaxId: 12242]}
sysittpsqfvflssawadpielinlctnalgnqfqtqqartvvqrqfsevwkpspqvtv
rfpdsdfkvyrynavldplvtallgafdtrnretldatrrvddatvairsainnliveli
rgtgsynrssfesssglvwts

Timeline for d4gqhk1:

• d4gqhk1 first appeared in SCOPe 2.04, called d4gqhk_
  
• d4gqhk1 appears in SCOPe 2.07