SCOPe 2.06: Domain d4gmdb_: 4gmd B:

Lineage for d4gmdb_ (4gmd B:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.0: automated matches [191323] (1 protein)
   not a true family

6. Protein automated matches [190123] (130 species)
   not a true protein

7. Species Pseudomonas aeruginosa, PA01 [TaxId:208964] [226294] (11 PDB entries)

8. Domain d4gmdb_: 4gmd B: [252235]
   automated match to d3uwob_
   complexed with atm, ca, cl, gol

Details for d4gmdb_

PDB Entry: 4gmd, 1.98 Å

PDB Description: The crystal structure of thymidylate kinase from Pseudomonas aeruginosa PAO1 in complex with AZT Monophosphate

PDB Compounds: (B:) thymidylate kinase

SCOPe Domain Sequences for d4gmdb_:

Sequence, based on SEQRES records:

>d4gmdb_ c.37.1.0 (B:) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
tglfvtlegpegagkstnrdylaerlrergievqltrepggtplaerirelllapsdepm
aadtelllmfaaraqhlagvirpalargavvlcdrftdatyayqgggrglpeariaales
fvqgdlrpdltlvfdlpveiglaraaargrldrfeqedrrffeavrqtylqraaqapery
qvldaglplaevqagldrllpnllerl

Sequence, based on observed residues (ATOM records):

>d4gmdb_ c.37.1.0 (B:) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
tglfvtlegpegagkstnrdylaerlrergievqltrepggtplaerirelllapsdepm
aadtelllmfaaraqhlagvirpalargavvlcdrftdatyayqgggrglpeariaales
fvqgdlrpdltlvfdlpvedrfeqedrrffeavrqtylqraaqaperyqvldaglplaev
qagldrllpnllerl

Timeline for d4gmdb_:

• d4gmdb_ first appeared in SCOPe 2.04
  
• d4gmdb_ appears in SCOPe 2.05
  
• d4gmdb_ appears in SCOPe 2.07
  
• d4gmdb_ appears in the current release, SCOPe 2.08