SCOPe 2.04: Domain d4fmdb_: 4fmd B:

Lineage for d4fmdb_ (4fmd B:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.8: G proteins [52592] (79 proteins)
   core: mixed beta-sheet of 6 strands, order 231456; strand 2 is antiparallel to the rest

6. Protein Rab1a [142241] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [142242] (3 PDB entries)
   Uniprot P62820 7-175

8. Domain d4fmdb_: 4fmd B: [252037]
   automated match to d3l0ib_
   complexed with af3, gdp, mg, peg, pge

Details for d4fmdb_

PDB Entry: 4fmd, 3.05 Å

PDB Description: EspG-Rab1 complex structure at 3.05 A

PDB Compounds: (B:) Ras-related protein Rab-1A

SCOPe Domain Sequences for d4fmdb_:

Sequence; same for both SEQRES and ATOM records:

>d4fmdb_ c.37.1.8 (B:) Rab1a {Human (Homo sapiens) [TaxId: 9606]}
peydylfkllligdsgvgksclllrfaddtytesyistigvdfkirtieldgktiklqiw
dtagqerfrtitssyyrgahgiivvydvtdqesfnnvkqwlqeidryasenvnkllvgnk
cdlttkkvvdyttakefadslgipfletsaknatnveqsfmtmaaeikkrm

Timeline for d4fmdb_:

• d4fmdb_ is new in SCOPe 2.04-stable
  
• d4fmdb_ appears in SCOPe 2.05
  
• d4fmdb_ appears in the current release, SCOPe 2.08