SCOPe 2.04: Domain d4dkta2: 4dkt A:113-293

Lineage for d4dkta2 (4dkt A:113-293)

1. Root: SCOPe 2.04

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
   sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold

4. Superfamily b.2.9: Peptidylarginine deiminase Pad4, middle domain [110083] (1 family)
   automatically mapped to Pfam PF08527

5. Family b.2.9.1: Peptidylarginine deiminase Pad4, middle domain [110084] (1 protein)

6. Protein Peptidylarginine deiminase Pad4, middle domain [110085] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [110086] (12 PDB entries)
   Uniprot Q9UM07

8. Domain d4dkta2: 4dkt A:113-293 [251475]
   Other proteins in same PDB: d4dkta1, d4dkta3
   automated match to d2dexx1
   complexed with ca, edo, so4

Details for d4dkta2

PDB Entry: 4dkt, 2.98 Å

PDB Description: crystal structure of human peptidylarginine deiminase 4 in complex with n-acetyl-l-threonyl-l-alpha-aspartyl-n5-[(1e)-2- fluoroethanimidoyl]-l-ornithinamide

PDB Compounds: (A:) Protein-arginine deiminase type-4

SCOPe Domain Sequences for d4dkta2:

Sequence, based on SEQRES records:

>d4dkta2 b.2.9.1 (A:113-293) Peptidylarginine deiminase Pad4, middle domain {Human (Homo sapiens) [TaxId: 9606]}
veislcaditrtgkvkptravkdqrtwtwgpcgqgaillvncdrdnlessamdceddevl
dsedlqdmslmtlstktpkdfftnhtlvlhvarsemdkvrvfqatrgklsskcsvvlgpk
wpshylmvpggkhnmdfyvealafpdtdfpglitltislldtsnlelpeavvfqdsvvfr
v

Sequence, based on observed residues (ATOM records):

>d4dkta2 b.2.9.1 (A:113-293) Peptidylarginine deiminase Pad4, middle domain {Human (Homo sapiens) [TaxId: 9606]}
veislcaditrtgkvkptkdqrtwtwgpcgqgaillvncdrdnlessamdceddevldse
dlqdmslmtlstktpkdfftnhtlvlhvarsemdkvrvfqatcsvvlgpkwpshylmvpg
gkhnmdfyvealafpdtdfpglitltislldtsnlelpeavvfqdsvvfrv

Timeline for d4dkta2:

• d4dkta2 is new in SCOPe 2.04-stable
  
• d4dkta2 appears in SCOPe 2.05
  
• d4dkta2 appears in the current release, SCOPe 2.08