Lineage for d4dkta1 (4dkt A:2-112)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2366402Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands
  4. 2366403Superfamily b.6.1: Cupredoxins [49503] (8 families) (S)
    contains copper-binding site
  5. 2367956Family b.6.1.6: Peptidylarginine deiminase Pad4, N-terminal domain [110107] (1 protein)
    probably related to cupredoxins but lacking the metal-binding site
    automatically mapped to Pfam PF08526
  6. 2367957Protein Peptidylarginine deiminase Pad4, N-terminal domain [110108] (1 species)
  7. 2367958Species Human (Homo sapiens) [TaxId:9606] [110109] (16 PDB entries)
    Uniprot Q9UM07
  8. 2367974Domain d4dkta1: 4dkt A:2-112 [251474]
    Other proteins in same PDB: d4dkta2, d4dkta3
    automated match to d2dexx2
    complexed with ca, edo, so4

Details for d4dkta1

PDB Entry: 4dkt (more details), 2.98 Å

PDB Description: crystal structure of human peptidylarginine deiminase 4 in complex with n-acetyl-l-threonyl-l-alpha-aspartyl-n5-[(1e)-2- fluoroethanimidoyl]-l-ornithinamide
PDB Compounds: (A:) Protein-arginine deiminase type-4

SCOPe Domain Sequences for d4dkta1:

Sequence, based on SEQRES records: (download)

>d4dkta1 b.6.1.6 (A:2-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

Sequence, based on observed residues (ATOM records): (download)

>d4dkta1 b.6.1.6 (A:2-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

SCOPe Domain Coordinates for d4dkta1:

Click to download the PDB-style file with coordinates for d4dkta1.
(The format of our PDB-style files is described here.)

Timeline for d4dkta1: