SCOPe 2.06: Domain d3sm5e1: 3sm5 E:5-326

Lineage for d3sm5e1 (3sm5 E:5-326)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.19: Viral protein domain [49817] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll; form trimers

4. Superfamily b.19.1: Viral protein domain [49818] (4 families)
   forms homotrimers

5. Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)

6. Protein Hemagglutinin [49824] (9 species)
   includes rudiment esterase domain

7. Species Influenza A virus, different strains [TaxId:11320] [49825] (116 PDB entries)

8. Domain d3sm5e1: 3sm5 E:5-326 [249501]
   Other proteins in same PDB: d3sm5a2, d3sm5b_, d3sm5c2, d3sm5d_, d3sm5e2, d3sm5f_, d3sm5l1, d3sm5l2, d3sm5m1, d3sm5m2, d3sm5n1, d3sm5n2
   automated match to d1rd8a_
   complexed with man, nag, so4

Details for d3sm5e1

PDB Entry: 3sm5, 3.19 Å

PDB Description: influenza hemagglutinin in complex with a neutralizing antibody

PDB Compounds: (E:) Hemagglutinin

SCOPe Domain Sequences for d3sm5e1:

Sequence; same for both SEQRES and ATOM records:

>d3sm5e1 b.19.1.2 (E:5-326) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dticigyhannstdtvdtvleknvtvthsvnlledshngklcllkgiaplqlgncsvagw
ilgnpecellisreswsyivekpnpengtcypghfadyeelreqlssvssferfeifpke
sswpnhtttgvsascshngessfyknllwltgknglypnlsksyannkekevlvlwgvhh
ppnigdqralyhtenayvsvvsshysrkftpeiakrpkvrdregrinyywtllepgdtii
feangnliapryafalsrgfgsgiinsnapmdecdakcqtpqgainsslpfqnvhpvtig
ecpkyvrsaklrmvtglrnips

Timeline for d3sm5e1:

• d3sm5e1 first appeared in SCOPe 2.04, called d3sm5e_
  
• d3sm5e1 was called d3sm5e_ in SCOPe 2.05
  
• d3sm5e1 does not appear in SCOPe 2.07