SCOPe 2.04: Domain d3sckf_: 3sck F:

Lineage for d3sckf_ (3sck F:)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
   core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542

4. Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family)
   automatically mapped to Pfam PF09408

5. Family d.318.1.1: SARS receptor-binding domain-like [143588] (2 proteins)
   part of PfamB PB000266

6. Protein automated matches [254724] (1 species)
   not a true protein

7. Species SARS coronavirus [TaxId:227859] [256080] (4 PDB entries)

8. Domain d3sckf_: 3sck F: [249350]
   Other proteins in same PDB: d3scka_, d3sckb_
   automated match to d3d0ie_
   complexed with cl, zn

Details for d3sckf_

PDB Entry: 3sck, 3 Å

PDB Description: crystal structure of spike protein receptor-binding domain from a predicted sars coronavirus civet strain complexed with human-civet chimeric receptor ace2

PDB Compounds: (F:) Spike glycoprotein

SCOPe Domain Sequences for d3sckf_:

Sequence, based on SEQRES records:

>d3sckf_ d.318.1.1 (F:) automated matches {SARS coronavirus [TaxId: 227859]}
pfgevfnatkfpsvyawerkkisncvadysvlynstffstfkcygvsatklndlcfsnvy
adsfvvkgddvrqiapgqtgviadynyklpddfmgcvlawntrnidatstgnynykyryl
rhgklrpferdisnvpfspdgkpctppapncywplrgygfytttgigyqpyrvvvlsfe

Sequence, based on observed residues (ATOM records):

>d3sckf_ d.318.1.1 (F:) automated matches {SARS coronavirus [TaxId: 227859]}
pfgevfnatkfpsvyawerkkisncvadysvlynstffstfkcygvsatklnvyadsfvv
kgddvrqiapgqtgviadynyklpddfmgcvlawntrnidatstgnynykyrylrhgklr
pferdisnvpfspdgkpctppapncywplrgygfytttgigyqpyrvvvlsfe

Timeline for d3sckf_:

• d3sckf_ is new in SCOPe 2.04-stable
  
• d3sckf_ appears in SCOPe 2.05
  
• d3sckf_ appears in the current release, SCOPe 2.08