SCOPe 2.07: Domain d3scke_: 3sck E:

Lineage for d3scke_ (3sck E:)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
   core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542

4. Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family)
   automatically mapped to Pfam PF09408

5. Family d.318.1.1: SARS receptor-binding domain-like [143588] (1 protein)
   part of PfamB PB000266

6. Protein Spike protein S1 [143589] (4 species)

7. Species SARS coronavirus [TaxId:227859] [143590] (14 PDB entries)
   Uniprot P59594 320-502! Uniprot P59594 321-512! Uniprot P59594 323-502

8. Domain d3scke_: 3sck E: [249349]
   Other proteins in same PDB: d3scka_, d3sckb_
   automated match to d3d0ie_
   complexed with cl, zn

Details for d3scke_

PDB Entry: 3sck, 3 Å

PDB Description: crystal structure of spike protein receptor-binding domain from a predicted sars coronavirus civet strain complexed with human-civet chimeric receptor ace2

PDB Compounds: (E:) Spike glycoprotein

SCOPe Domain Sequences for d3scke_:

Sequence, based on SEQRES records:

>d3scke_ d.318.1.1 (E:) Spike protein S1 {SARS coronavirus [TaxId: 227859]}
pfgevfnatkfpsvyawerkkisncvadysvlynstffstfkcygvsatklndlcfsnvy
adsfvvkgddvrqiapgqtgviadynyklpddfmgcvlawntrnidatstgnynykyryl
rhgklrpferdisnvpfspdgkpctppapncywplrgygfytttgigyqpyrvvvlsfe

Sequence, based on observed residues (ATOM records):

>d3scke_ d.318.1.1 (E:) Spike protein S1 {SARS coronavirus [TaxId: 227859]}
pfgevfnatkfpsvyawerkkisncvadysvlynstffstfkcygvsatklnvyadsfvv
kgddvrqiapgqtgviadynyklpddfmgcvlawntrnidatstgnynykyrylrhgklr
pferdisnvpfspdgkpctppapncywplrgygfytttgigyqpyrvvvlsfe

Timeline for d3scke_:

• d3scke_ first appeared in SCOPe 2.04
  
• d3scke_ appears in SCOPe 2.06
  
• d3scke_ appears in the current release, SCOPe 2.08