SCOPe 2.08: Domain d3rmda2: 3rmd A:376-902

Lineage for d3rmda2 (3rmd A:376-902)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (5 proteins)
   in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain
   

6. Protein Family B DNA polymerase [56680] (7 species)

7. Species Bacteriophage RB69 [TaxId:12353] [56681] (93 PDB entries)

8. Domain d3rmda2: 3rmd A:376-902 [249165]
   Other proteins in same PDB: d3rmda1, d3rmdb1, d3rmdc1, d3rmdd1
   automated match to d3l8bb2
   protein/DNA complex; complexed with dtp

Details for d3rmda2

PDB Entry: 3rmd, 2.98 Å

PDB Description: crystal structure of a replicative dna polymerase bound to dna containing thymine glycol

PDB Compounds: (A:) DNA polymerase

SCOPe Domain Sequences for d3rmda2:

Sequence; same for both SEQRES and ATOM records:

>d3rmda2 e.8.1.1 (A:376-902) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmfd

Timeline for d3rmda2:

• d3rmda2 first appeared in SCOPe 2.04
  
• d3rmda2 appears in SCOPe 2.07