Lineage for d3rmbb1 (3rmb B:1-375)

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1605035Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 1606596Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 1607175Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (16 proteins)
    contains Pfam PF00929
  6. 1607176Protein Exonuclease domain of family B DNA polymerases [53125] (8 species)
    elaborated with additional structures and the N-terminal subdomain
  7. 1607177Species Bacteriophage RB69 [TaxId:12353] [53127] (92 PDB entries)
    additional N-terminal subdomain contains rudimental OB-fold and rudimental ferredoxin-like fold
  8. 1607254Domain d3rmbb1: 3rmb B:1-375 [249150]
    Other proteins in same PDB: d3rmba2, d3rmbb2, d3rmbc2, d3rmbd2
    automated match to d3l8bb1
    protein/DNA complex; complexed with so4

Details for d3rmbb1

PDB Entry: 3rmb (more details), 2.65 Å

PDB Description: crystal structure of a replicative dna polymerase bound to dna containing thymine glycol
PDB Compounds: (B:) DNA polymerase

SCOPe Domain Sequences for d3rmbb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3rmbb1 c.55.3.5 (B:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]}

SCOPe Domain Coordinates for d3rmbb1:

Click to download the PDB-style file with coordinates for d3rmbb1.
(The format of our PDB-style files is described here.)

Timeline for d3rmbb1: