SCOPe 2.06: Domain d3kska1: 3ksk A:2-159

Lineage for d3kska1 (3ksk A:2-159)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.52: Restriction endonuclease-like [52979] (4 superfamilies)
   core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest

4. Superfamily c.52.1: Restriction endonuclease-like [52980] (36 families)

5. Family c.52.1.6: Restriction endonuclease PvuII [52996] (2 proteins)
   automatically mapped to Pfam PF09225

6. Protein automated matches [254694] (1 species)
   not a true protein

7. Species Proteus vulgaris [TaxId:585] [255911] (1 PDB entry)

8. Domain d3kska1: 3ksk A:2-159 [247264]
   Other proteins in same PDB: d3kska3, d3kskb3
   automated match to d1ni0c_
   complexed with mpd, so4, trs

Details for d3kska1

PDB Entry: 3ksk, 2.35 Å

PDB Description: crystal structure of single chain pvuii

PDB Compounds: (A:) Type-2 restriction enzyme PvuII

SCOPe Domain Sequences for d3kska1:

Sequence, based on SEQRES records:

>d3kska1 c.52.1.6 (A:2-159) automated matches {Proteus vulgaris [TaxId: 585]}
shpdlnkllelwphiqeyqdlalkhgindifqdnggkllqvllitgltvlpgregndavd
nagqeyelksinidltkgfsthhhmnpviiakyrqvpwifaiyrgiaieaiyrlepkdle
fyydkwerkwysdghkdinnpkipvkyvmehgtkiygs

Sequence, based on observed residues (ATOM records):

>d3kska1 c.52.1.6 (A:2-159) automated matches {Proteus vulgaris [TaxId: 585]}
shpdlnkllelwphiqeyqdlalkhgindifqdnggkllqvllitgltvlpgndavdnag
qeyelksinidltkgfsthhhmnpviiakyrqvpwifaiyrgiaieaiyrlepkdlefyy
dkwerkwysdghkdinnpkipvkyvmehgtkiygs

Timeline for d3kska1:

• d3kska1 first appeared in SCOPe 2.04
  
• d3kska1 appears in SCOPe 2.05
  
• d3kska1 appears in SCOPe 2.07
  
• d3kska1 appears in the current release, SCOPe 2.08