SCOPe 2.05: Domain d3ksbd_: 3ksb D:

Lineage for d3ksbd_ (3ksb D:)

1. Root: SCOPe 2.05

2. Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)

3. Fold e.78: DNA gyrase B, C-terminal domain-like [254116] (1 superfamily)
   2 domains: (1) toprim alpha/beta; (2) alpha+beta "tail" domain

4. Superfamily e.78.1: DNA gyrase B, C-terminal domain-like [254138] (1 family)
   Pfam PF00986; homologous to Type II DNA topoisomerase N-terminal half

5. Family e.78.1.1: DNA gyrase B, C-terminal domain [254182] (1 protein)

6. Protein DNA gyrase beta-prime domain [254406] (3 species)

7. Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [254843] (5 PDB entries)

8. Domain d3ksbd_: 3ksb D: [247263]
   Other proteins in same PDB: d3ksba_, d3ksbb_
   protein/DNA complex; complexed with mg

Details for d3ksbd_

PDB Entry: 3ksb, 3.5 Å

PDB Description: Detailed structural insight into the DNA cleavage complex of type IIA topoisomerases (re-sealed form)

PDB Compounds: (D:) DNA topoisomerase 4 subunit B

SCOPe Domain Sequences for d3ksbd_:

Sequence, based on SEQRES records:

>d3ksbd_ e.78.1.1 (D:) DNA gyrase beta-prime domain {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
kltpaqsknpaknelylvegdsaggsakqgrdrkfqailplrgkvintakakmadilkne
eintmiytigagvgadfsiedanydkiiimtdadtdgahiqtllltffyrymrplveagh
vyialpplykmskgkgkkeevayawtdgeleelrkqfgkgatlqrykglgemnadqlwet
tmnpetrtlirvtiedlaraerrvnvlmgdkveprrkwiednvkft

Sequence, based on observed residues (ATOM records):

>d3ksbd_ e.78.1.1 (D:) DNA gyrase beta-prime domain {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
kltpaqsknpaknelylvegdsaggsakqgrdrkfqailplrgkvintakadilkneein
tmiytigagvdfsieanydkiiimtdadtdgahiqtllltffyrymrplveaghvyialp
plykmskkkeevayawtdgeleelrkqfatlqrykglgemnadqlwettmnpetrtlirv
tiedlaraerrvnvlmgdkveprrkwiednvkft

Timeline for d3ksbd_:

• d3ksbd_ first appeared in SCOPe 2.04
  
• d3ksbd_ appears in SCOPe 2.06
  
• d3ksbd_ appears in the current release, SCOPe 2.08