SCOPe 2.04: Domain d3k5nb2: 3k5n B:390-769

Lineage for d3k5nb2 (3k5n B:390-769)

1. Root: SCOPe 2.04

2. Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (5 proteins)

6. Protein automated matches [226972] (8 species)
   not a true protein

7. Species Escherichia coli [TaxId:562] [225831] (3 PDB entries)

8. Domain d3k5nb2: 3k5n B:390-769 [247116]
   Other proteins in same PDB: d3k5na1, d3k5nb1
   automated match to d1q8ia2
   protein/DNA complex

Details for d3k5nb2

PDB Entry: 3k5n, 3.15 Å

PDB Description: crystal structure of e.coli pol ii-abasic dna binary complex

PDB Compounds: (B:) DNA polymerase II

SCOPe Domain Sequences for d3k5nb2:

Sequence, based on SEQRES records:

>d3k5nb2 e.8.1.1 (B:390-769) automated matches {Escherichia coli [TaxId: 562]}
nlgevpphaspggyvmdsrpglydsvlvldykslypsiirtflidpvglvegmaqpdpeh
stegfldawfsrekhclpeivtniwhgrdeakrqgnkplsqalkiimnafygvlgttacr
ffdprlassitmrghqimrqtkalieaqgydviygdtdstfvwlkgahseeeaakigral
vqhvnawwaetlqkqrltsaleleyethfcrflmptirgadtgskkryagliqegdkqrm
vfkgletvrtdwtplaqqfqqelylrifrnepyqeyvretidklmageldarlvyrkrlr
rplseyqrnvpphvraarladeenqkrgrplqyqnrgtikyvwttngpepldyqrspldy
ehyltrqlqpvaegilpfie

Sequence, based on observed residues (ATOM records):

>d3k5nb2 e.8.1.1 (B:390-769) automated matches {Escherichia coli [TaxId: 562]}
nlgevpphdsrpglydsvlvldykslypsiirtflidpvglvegmaqpdpehstegflda
wfsrekhclpeivtniwhgrdeakrqgnkplsqalkiimnafygvlgttacrffdprlas
sitmrghqimrqtkalieaqgydviygdtdstfvwlkgahseeeaakigralvqhvnaww
aetlqkqrltsaleleyethfcrflmpryagliqegdkqrmvfkgletvrtdwtplaqqf
qqelylrifrnepyqeyvretidklmageldarlvyrkrlrrplseyqrnvpphvraarl
adeenqkrgrplqyqnrgtikyvwttngpepldyqrspldyehyltrqlqpvaegilpfi
e

Timeline for d3k5nb2:

• d3k5nb2 is new in SCOPe 2.04-stable
  
• d3k5nb2 appears in SCOPe 2.05
  
• d3k5nb2 appears in the current release, SCOPe 2.08