SCOPe 2.04: Domain d3k5na1: 3k5n A:1-389

Lineage for d3k5na1 (3k5n A:1-389)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (15 families)
   consists of one domain of this fold

5. Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (16 proteins)
   contains Pfam PF00929

6. Protein automated matches [190162] (4 species)
   not a true protein

7. Species Escherichia coli [TaxId:562] [187263] (13 PDB entries)

8. Domain d3k5na1: 3k5n A:1-389 [247113]
   Other proteins in same PDB: d3k5na2, d3k5nb2
   automated match to d1q8ia1
   protein/DNA complex

Details for d3k5na1

PDB Entry: 3k5n, 3.15 Å

PDB Description: crystal structure of e.coli pol ii-abasic dna binary complex

PDB Compounds: (A:) DNA polymerase II

SCOPe Domain Sequences for d3k5na1:

Sequence, based on SEQRES records:

>d3k5na1 c.55.3.5 (A:1-389) automated matches {Escherichia coli [TaxId: 562]}
maqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhilqge
qgfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylmerfi
tspvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqrivym
lgpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkhaery
rlplrlgrdnselewrehgfkngvffaqakgrliidgiealksafwnfssfsletvaqel
lgegksidnpwdrmdeidrrfaedkpalatynlkncelvtqifhkteimpflleratvng
lpvdrhggsvaafghlyfprmhragyvap

Sequence, based on observed residues (ATOM records):

>d3k5na1 c.55.3.5 (A:1-389) automated matches {Escherichia coli [TaxId: 562]}
maqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhilqge
qgfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylmerfi
tspvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqrivym
lgpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkhaery
rlplrlgrdnselewffaqakgrliidgiealksafwnfssfsletvaqellgegwdrmd
eidrrfaedkpalatynlkncelvtqifhkteimpflleratvnglpvdrhggsvaafgh
lyfprmhragyvap

Timeline for d3k5na1:

• d3k5na1 is new in SCOPe 2.04-stable
  
• d3k5na1 appears in SCOPe 2.05
  
• d3k5na1 appears in the current release, SCOPe 2.08