SCOPe 2.08: Domain d3ibvb_: 3ibv B:

Lineage for d3ibvb_ (3ibv B:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.1: ARM repeat [48371] (28 families)

5. Family a.118.1.19: Exportin HEAT-like repeat [117002] (2 proteins)
   Pfam PF08389, Pfam PF08767; full length proteins have several extra helices at C-terminus
   this is a repeat family; one repeat unit is 3gb8 A:533-577 found in domain

6. Protein Exportin-T (Xpot) [254387] (1 species)

7. Species Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [254820] (1 PDB entry)

8. Domain d3ibvb_: 3ibv B: [246902]
   complexed with ca
   applies to all domains of a family if the common domain is composed of a different number of small repeating units

Details for d3ibvb_

PDB Entry: 3ibv, 3.1 Å

PDB Description: Karyopherin cytosolic state

PDB Compounds: (B:) Exportin-T

SCOPe Domain Sequences for d3ibvb_:

Sequence, based on SEQRES records:

>d3ibvb_ a.118.1.19 (B:) Exportin-T (Xpot) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
msaqdvenaveaaldpsvgpiikqqatdfigslrssstgwkicheifsektkykpstrli
clqtlsekvrewnnesnllelqmirdsvwsyikelsfldepayisnavqhlltllflqly
psnwndffaslqgviaassqsefsnfylkvllsigdeiadslvlktdvqiqkdnlvkdai
randmsdivsfvyemmlaysnaknygtvglclqvyaqwvswininlivnepcmnllysfl
qieelrcaacetmteivnkkmkpleklnllnilnlnlffsksqeqstdpnfdehvaklin
aqgvelvaiksdpselspelkencsfqlynlfpylirylsddydetstavfpflsdllvs
lrkessskelsaslkeflkslleaiikkmkydesqewdddpdseeeaefqemrkklkifq
dtinsidsslfssymysaitsslstaatlspenswqliefalyetyifgeglrgpdaffn
evdksptvlsqilalvttsqvcrhphplvqllymeilvryasffdyesaaipalieyfvg
prgihntnervrprawylfyrfvksikkqvvnytesslamlgdllnisvspvtdmdapvp
tlnssirnsdfnsqlylfetvgvlissgnltpeeqalycdslinaligkanaalssdlsa
leniisvycslmaignfakgfpargseevawlasfnkasdeiflildrmgfnedirgavr
ftsgriinvvgpdmlpkvpqlisillnsidmnelvdvlsfisqlihiykdnmmeitnrml
ptllmrifsslsaapqgtddavkqndlrksyisfilqllnkgfgsilfteenqvyfdpli
nsilhfanlvgepatqkssialvskmvslwggkdgiagfenftlsltplcfempvnpnfn
trdgqslvvlgelaglqkiileklgdiyksylvtvyfptvnfpdvmaseylqals

Sequence, based on observed residues (ATOM records):

>d3ibvb_ a.118.1.19 (B:) Exportin-T (Xpot) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
msaqdvenaveaaldpsvgpiikqqatdfigslrssstgwkicheifsektkykpstrli
clqtlsekvrewnnesnllelqmirdsvwsyikelsfldepayisnavqhlltllflqly
psnwndffaslqgviaassqsefsnfylkvllsigdeiadslvlktdvqiqkdnlvkdai
randmsdivsfvyemmlaysnaknygtvglclqvyaqwvswininlivnepcmnllysfl
qieelrcaacetmteivnkkmkpleklnllnilnlnlffsksqtdpnfdehvaklinaqg
velvaiksdpselspelkencsfqlynlfpylirylsddydetstavfpflsdllvslrk
essskelsaslkeflkslleaiikkmkydesqewdddpdseeeaefqemrkklkifqdti
nsidsslfssymysaitsslstaatlspenswqliefalyetyifgeglrgpdaffndks
ptvlsqilalvttsqvcrhphplvqllymeilvryasffdyesaaipalieyfvgprgih
ntnervrprawylfyrfvksikkqvvnytesslamlgdllnisvspvtdmdapvptlnss
irnsdfnsqlylfetvgvlissgnltpeeqalycdslinaligkanaalssdlseniisv
ycslmaignfakgfpargseevawlasfnkasdeiflildrmgfnedirgavrftsgrii
nvvgpdmlpkvpqlisillnsidmnelvdvlsfisqlihiykdnmmeitnrmlptllmri
fsslsaddavkqndlrksyisfilqllnkgsifteenqvyfdplinsilhfatqkssial
vskmvslgfenftlsltplcfemlvvlgelaglqkiileksylvtvyfptdvmaseylqa
ls

Timeline for d3ibvb_:

• d3ibvb_ first appeared in SCOPe 2.04
  
• d3ibvb_ appears in SCOPe 2.07