SCOPe 2.06: Domain d3gyya_: 3gyy A:

Lineage for d3gyya_ (3gyy A:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.0: automated matches [191309] (1 protein)
   not a true family

6. Protein automated matches [190039] (140 species)
   not a true protein

7. Species Halomonas elongata [TaxId:2746] [255854] (3 PDB entries)

8. Domain d3gyya_: 3gyy A: [246390]
   automated match to d2ceya_
   complexed with zn

Details for d3gyya_

PDB Entry: 3gyy, 2.2 Å

PDB Description: The ectoine binding protein of the TeaABC TRAP transporter TeaA in the Apo-State

PDB Compounds: (A:) periplasmic substrate binding protein

SCOPe Domain Sequences for d3gyya_:

Sequence, based on SEQRES records:

>d3gyya_ c.94.1.0 (A:) automated matches {Halomonas elongata [TaxId: 2746]}
dnwryaheeyegdvqdvfaqafkgyvednsdhtvqvyrfgelgesddimeqtqngilqfv
nqspgftgslipsaqiffipylmptdmdtvleffdeskainemfpklyaehglellkmyp
egemvvtadepitspedfdnkkirtmtnpllaetykafgatptplpwgevygglqtgiid
gqenpifwiesgglyevspnltftshgwfttammanqdfyeglseedqqlvqdaadaayd
htiehikglseeslekikaasdevtvtrlndeqiqafkerapqveekfiemtgeqgqell
dqfkadlk

Sequence, based on observed residues (ATOM records):

>d3gyya_ c.94.1.0 (A:) automated matches {Halomonas elongata [TaxId: 2746]}
dnwryaheeyegdvqdvfaqafkgyvednsdhtvqvyrfgelgimeqtqngilqfvnqsp
gftgslipsaqiffipylmptdmdtvleffdeskainemfpklyaehglellkmypegem
vvtadepitspedfdnkkirtmtnpllaetykafgatptplpwgevygglqtgiidgqen
pifwiesgglyevspnltftshgwfttammanqdfyeglseedqqlvqdaadaaydhtie
hikglseeslekikaasdevtvtrlndeqiqafkerapqveekfiemtgeqgqelldqfk
adlk

Timeline for d3gyya_:

• d3gyya_ first appeared in SCOPe 2.04
  
• d3gyya_ appears in SCOPe 2.05
  
• d3gyya_ appears in SCOPe 2.07
  
• d3gyya_ appears in the current release, SCOPe 2.08