SCOPe 2.08: Domain d1qmcb1: 1qmc B:220-270

Lineage for d1qmcb1 (1qmc B:220-270)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.34: SH3-like barrel [50036] (21 superfamilies)
   barrel, partly opened; n*=4, S*=8; meander
   the last strand is interrupted by a turn of 3-10 helix

4. Superfamily b.34.7: DNA-binding domain of retroviral integrase [50122] (2 families)

5. Family b.34.7.1: DNA-binding domain of retroviral integrase [50123] (1 protein)
   Pfam PF00552, Pfam PF18103

6. Protein DNA-binding domain of retroviral integrase [50124] (4 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [50125] (8 PDB entries)

8. Domain d1qmcb1: 1qmc B:220-270 [24634]
   Other proteins in same PDB: d1qmca2, d1qmcb2

Details for d1qmcb1

PDB Entry: 1qmc

PDB Description: c-terminal dna-binding domain of hiv-1 integrase, nmr, 42 structures

PDB Compounds: (B:) hiv-1 integrase

SCOPe Domain Sequences for d1qmcb1:

Sequence; same for both SEQRES and ATOM records:

>d1qmcb1 b.34.7.1 (B:220-270) DNA-binding domain of retroviral integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
iqnfrvyyrdsrnplwkgpakllwkgegavviqdnsdikvvprrkakiird

Timeline for d1qmcb1:

• d1qmcb1 first appeared (with stable ids) in SCOP 1.55, called d1qmcb_
  
• d1qmcb1 appears in SCOPe 2.07