Lineage for d3gdxa2 (3gdx A:92-148)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2001088Fold a.60: SAM domain-like [47768] (16 superfamilies)
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. 2001966Superfamily a.60.12: PsbU/PolX domain-like [81585] (3 families) (S)
    contains one classic and one pseudo HhH motifs
  5. 2001967Family a.60.12.1: DNA polymerase beta-like, second domain [81584] (3 proteins)
    topological similarity to the N-terminal domain
    automatically mapped to Pfam PF10391
  6. 2001968Protein DNA polymerase beta [81579] (2 species)
  7. 2001969Species Human (Homo sapiens) [TaxId:9606] [81575] (145 PDB entries)
  8. 2002008Domain d3gdxa2: 3gdx A:92-148 [246282]
    Other proteins in same PDB: d3gdxa1, d3gdxa3
    automated match to d4klia2
    protein/DNA complex; complexed with 4bd, cl, mg, na

Details for d3gdxa2

PDB Entry: 3gdx (more details), 2.2 Å

PDB Description: Dna polymerase beta with a gapped DND substrate and dTMP(CF2)PP
PDB Compounds: (A:) DNA polymerase beta

SCOPe Domain Sequences for d3gdxa2:

Sequence; same for both SEQRES and ATOM records: (download)

>d3gdxa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
dtsssinfltrvsgigpsaarkfvdegiktledlrknedklnhhqriglkyfgdfek

SCOPe Domain Coordinates for d3gdxa2:

Click to download the PDB-style file with coordinates for d3gdxa2.
(The format of our PDB-style files is described here.)

Timeline for d3gdxa2: