SCOPe 2.08: Domain d3gb8b1: 3gb8 B:94-294

Lineage for d3gb8b1 (3gb8 B:94-294)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.142: ATP-grasp [56058] (2 superfamilies)
   Consists of two subdomains with different alpha+beta folds
   shares functional and structural similarities with the PIPK and protein kinase superfamilies

4. Superfamily d.142.2: DNA ligase/mRNA capping enzyme, catalytic domain [56091] (6 families)
   has a circularly permuted topology

5. Family d.142.2.5: m3G-cap binding domain of snurportin-1 [254171] (2 proteins)

6. Protein m3G-cap binding domain of snurportin-1 [254388] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [254821] (2 PDB entries)

8. Domain d3gb8b1: 3gb8 B:94-294 [246277]
   Other proteins in same PDB: d3gb8a_, d3gb8b2, d3gb8b3
   protein/RNA complex

Details for d3gb8b1

PDB Entry: 3gb8, 2.9 Å

PDB Description: crystal structure of crm1/snurportin-1 complex

PDB Compounds: (B:) Snurportin-1

SCOPe Domain Sequences for d3gb8b1:

Sequence; same for both SEQRES and ATOM records:

>d3gb8b1 d.142.2.5 (B:94-294) m3G-cap binding domain of snurportin-1 {Human (Homo sapiens) [TaxId: 9606]}
lpkhyanqlmlsewlidvpsdlgqewivvvcpvgkralivasrgstsaytksgycvnrfs
sllpggnrrnstakdytildciynevnqtyyvldvmcwrghpfydcqtdfrfywmhsklp
eeeglgektklnpfkfvglknfpctpeslcdvlsmdfpfevdgllfyhkqthyspgstpl
vgwlrpymvsdvlgvavpagp

Timeline for d3gb8b1:

• d3gb8b1 first appeared in SCOPe 2.04
  
• d3gb8b1 appears in SCOPe 2.07