SCOPe 2.08: Domain d3er8b_: 3er8 B:

Lineage for d3er8b_ (3er8 B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest

4. Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (61 families)

5. Family c.66.1.25: mRNA cap methylase [88785] (4 proteins)

6. Protein Polymerase regulatory subunit VP39 [53361] (2 species)

7. Species Vaccinia virus wr [TaxId:10254] [224905] (2 PDB entries)

8. Domain d3er8b_: 3er8 B: [245900]
   Other proteins in same PDB: d3er8c_, d3er8d_
   automated match to d3er9a_
   protein/DNA complex; protein/RNA complex

Details for d3er8b_

PDB Entry: 3er8, 3.18 Å

PDB Description: crystal structure of the heterodimeric vaccinia virus mrna polyadenylate polymerase complex with two fragments of rna

PDB Compounds: (B:) Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase

SCOPe Domain Sequences for d3er8b_:

Sequence, based on SEQRES records:

>d3er8b_ c.66.1.25 (B:) Polymerase regulatory subunit VP39 {Vaccinia virus wr [TaxId: 10254]}
mdvvsldkpfmyfeeidneldyepesanevakklpyqgqlklllgelfflsklqrhgild
gatvvyigsapgthirylrdhfynlgviikwmlidgrhhdpilnglrdvtlvtrfvdeey
lrsikkqlhpskiilisdvasaaggnepstadllsnyalqnvmisilnpvasslkwrcpf
pdqwikdfyiphgnkmlqpfapsysaemrllsiytgenmrltrvtksdavnyekkmyyln
kivrnkvvvnfdypnqeydyfhmyfmlrtvycnktfpttkakvlflqqsifrflnip

Sequence, based on observed residues (ATOM records):

>d3er8b_ c.66.1.25 (B:) Polymerase regulatory subunit VP39 {Vaccinia virus wr [TaxId: 10254]}
mdvvsldkpfmyfeeidneldyepesklpyqgqlklllgelfflsklqrhgildgatvvy
igsapgthirylrdhfynlgviikwmlidgrhhdpilnglrdvtlvtrfvdeeylrsikk
qlhpskiilisdvasgnepstadllsnyalqnvmisilnpvasslkwrcpfpdqwikdfy
iphgnkmlqpfapsysaemrllsiytgenmrltrvtksdavnyekkmyylnkivrnkvvv
nfdypnqeydyfhmyfmlrtvycnktfpttkakvlflqqsifrflnip

Timeline for d3er8b_:

• d3er8b_ first appeared in SCOPe 2.04
  
• d3er8b_ appears in SCOPe 2.07