SCOPe 2.08: Domain d3edkb2: 3edk B:96-517

Lineage for d3edkb2 (3edk B:96-517)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
   members of the family may contain various insert subdomains
   in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

6. Protein Cyclomaltodextrinase, central domain [102058] (1 species)
   protein shares similar domain organization with maltogenic amylases but differs in the spatial arrangement of its domains

7. Species Flavobacterium sp. 92 [TaxId:197856] [102059] (6 PDB entries)

8. Domain d3edkb2: 3edk B:96-517 [245853]
   Other proteins in same PDB: d3edka1, d3edka3, d3edkb1, d3edkb3
   automated match to d1h3ga3
   complexed with ca, gol

Details for d3edkb2

PDB Entry: 3edk, 1.77 Å

PDB Description: structural base for cyclodextrin hydrolysis

PDB Compounds: (B:) cyclomaltodextrinase

SCOPe Domain Sequences for d3edkb2:

Sequence; same for both SEQRES and ATOM records:

>d3edkb2 c.1.8.1 (B:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]}
gsaqrqgfgpgdaiyqimpdrfangdpsndnvagmreqadrrhgggrhggdirgtidhld
yiaglgftqlwptplvendaaaysyhgyaatdhyridprygsnedfvrlstearkrgmgl
iqdvvlshigkhhwwmkdlptpdwinyggkfvptqhhrvavqdpyaaqadsenftkgwfv
egmpdlnqtnplvanyliqnniwwieyaglsglridtygysdgaflteytrrlmaeyprl
nmvgqewstrvpvvarwqrgkanfdgytshlpslmdfplvdamrnalsktgeenglnevy
etlsldylypepqnlvlfggnhdmarmfsaagedfdrwrmnlvflmtmpripqfysgdei
lmtstvkgrddasyrrdfpggwagdkanafsgagltsqqraaqdlvrklanwrknqpvih
ng

Timeline for d3edkb2:

• d3edkb2 first appeared in SCOPe 2.04
  
• d3edkb2 appears in SCOPe 2.07