Lineage for d3b1ta3 (3b1t A:294-663)

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1925324Fold d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
    duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis
  4. 1925325Superfamily d.126.1: Pentein [55909] (8 families) (S)
  5. 1925387Family d.126.1.5: Peptidylarginine deiminase Pad4, catalytic C-terminal domain [111152] (1 protein)
    # functionally related to the amidinotransferase, similar active sites
    automatically mapped to Pfam PF03068
  6. 1925388Protein Peptidylarginine deiminase Pad4, catalytic C-terminal domain [111153] (1 species)
  7. 1925389Species Human (Homo sapiens) [TaxId:9606] [111154] (13 PDB entries)
    Uniprot Q9UM07
  8. 1925396Domain d3b1ta3: 3b1t A:294-663 [245355]
    Other proteins in same PDB: d3b1ta1, d3b1ta2
    automated match to d1wd8a3
    complexed with ca, so4, ycl

Details for d3b1ta3

PDB Entry: 3b1t (more details), 2.5 Å

PDB Description: Crystal structure of human peptidylarginine deiminase 4 in complex with o-Cl-amidine
PDB Compounds: (A:) Protein-arginine deiminase type-4

SCOPe Domain Sequences for d3b1ta3:

Sequence, based on SEQRES records: (download)

>d3b1ta3 d.126.1.5 (A:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
apwimtpntqppqevyacsifenedflksvttlamkakcklticpeeenmddqwmqdeme
igyiqaphktlpvvfdsprnrglkefpikrvmgpdfgyvtrgpqtggisgldsfgnlevs
ppvtvrgkeyplgrilfgdscypsndsrqmhqalqdflsaqqvqapvklysdwlsvghvd
eflsfvpapdrkgfrlllasprscyklfqeqqneghgeallfegikkkkqqkiknilsnk
tlrehnsfvercidwnrellkrelglaesdiidipqlfklkefskaeaffpnmvnmlvlg
khlgipkpfgpvingrccleekvcslleplglqctfindfftyhirhgevhcgtnvrrkp
fsfkwwnmvp

Sequence, based on observed residues (ATOM records): (download)

>d3b1ta3 d.126.1.5 (A:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
apwimtpntqppqevyacsifenedflksvttlamkakcklticpeeenmddqwmqdeme
igyiqaphktlpvvfdsprnrglkefpikrvmgpdfgyvtrgpqtggisgldsfgnlevs
ppvtvrgkeyplgrilfgdscypsndsrqmhqalqdflsaqqvqapvklysdwlsvghvd
eflsfvpapdrkgfrlllasprscyklfqeqqneghgeallfegkkqqkiknilsnktlr
ehnsfvercidwnrellkrelglaesdiidipqlfklkefskaeaffpnmvnmlvlgkhl
gipkpfgpvingrccleekvcslleplglqctfindfftyhirhgevhcgtnvrrkpfsf
kwwnmvp

SCOPe Domain Coordinates for d3b1ta3:

Click to download the PDB-style file with coordinates for d3b1ta3.
(The format of our PDB-style files is described here.)

Timeline for d3b1ta3: