Lineage for d3apna1 (3apn A:2-112)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2770398Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands
  4. 2770399Superfamily b.6.1: Cupredoxins [49503] (8 families) (S)
    contains copper-binding site
  5. 2772178Family b.6.1.6: Peptidylarginine deiminase Pad4, N-terminal domain [110107] (1 protein)
    probably related to cupredoxins but lacking the metal-binding site
    automatically mapped to Pfam PF08526
  6. 2772179Protein Peptidylarginine deiminase Pad4, N-terminal domain [110108] (1 species)
  7. 2772180Species Human (Homo sapiens) [TaxId:9606] [110109] (16 PDB entries)
    Uniprot Q9UM07
  8. 2772192Domain d3apna1: 3apn A:2-112 [245187]
    Other proteins in same PDB: d3apna2, d3apna3
    automated match to d2dexx2

Details for d3apna1

PDB Entry: 3apn (more details), 2.7 Å

PDB Description: Crystal structure of the human wild-type PAD4 protein
PDB Compounds: (A:) Protein-arginine deiminase type-4

SCOPe Domain Sequences for d3apna1:

Sequence, based on SEQRES records: (download)

>d3apna1 b.6.1.6 (A:2-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
aqgtlirvtpeqpthavcvlgtltqldicssapedctsfsinaspgvvvdiahsppakkk
stgsstwpldpgvevtltmkaasgstgdqkvqisyygpktppvkallylta

Sequence, based on observed residues (ATOM records): (download)

>d3apna1 b.6.1.6 (A:2-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
aqgtlirvtpeqpthavcvlgtltqldicssapctsfsinaspgvvvdiahstwpldpgv
evtltmkaasgstgdqkvqisyygpktppvkallylta

SCOPe Domain Coordinates for d3apna1:

Click to download the PDB-style file with coordinates for d3apna1.
(The format of our PDB-style files is described here.)

Timeline for d3apna1: