Lineage for d2yy8a_ (2yy8 A:)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2492420Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2492421Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2492607Family c.116.1.0: automated matches [191557] (1 protein)
    not a true family
  6. 2492608Protein automated matches [190961] (16 species)
    not a true protein
  7. 2492667Species Pyrococcus horikoshii [TaxId:53953] [255719] (1 PDB entry)
  8. 2492668Domain d2yy8a_: 2yy8 A: [244880]
    automated match to d2o3aa1
    protein/RNA complex; complexed with mta, sam

Details for d2yy8a_

PDB Entry: 2yy8 (more details), 2.48 Å

PDB Description: Crystal structure of archaeal tRNA-methylase for position 56 (aTrm56) from Pyrococcus horikoshii, complexed with S-adenosyl-L-methionine
PDB Compounds: (A:) UPF0106 protein PH0461

SCOPe Domain Sequences for d2yy8a_:

Sequence, based on SEQRES records: (download)

>d2yy8a_ c.116.1.0 (A:) automated matches {Pyrococcus horikoshii [TaxId: 53953]}

Sequence, based on observed residues (ATOM records): (download)

>d2yy8a_ c.116.1.0 (A:) automated matches {Pyrococcus horikoshii [TaxId: 53953]}

SCOPe Domain Coordinates for d2yy8a_:

Click to download the PDB-style file with coordinates for d2yy8a_.
(The format of our PDB-style files is described here.)

Timeline for d2yy8a_: