SCOPe 2.08: Domain d2xxyd_: 2xxy D:

Lineage for d2xxyd_ (2xxy D:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.0: automated matches [191309] (1 protein)
   not a true family

6. Protein automated matches [190039] (161 species)
   not a true protein

7. Species Norway rat (Rattus norvegicus) [TaxId:10116] [186759] (113 PDB entries)

8. Domain d2xxyd_: 2xxy D: [244617]
   automated match to d3gbaa_
   complexed with kai

Details for d2xxyd_

PDB Entry: 2xxy, 3 Å

PDB Description: crystal structure of the gluk2 (glur6) d776k lbd dimer in complex with kainate

PDB Compounds: (D:) Glutamate receptor, ionotropic kainate 2

SCOPe Domain Sequences for d2xxyd_:

Sequence, based on SEQRES records:

>d2xxyd_ c.94.1.0 (D:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
rslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirlvedgkyga
qddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgisilyrkgtpids
addlakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksneegiqrvlt
sdyaflmesttiefvtqrncnltqigglidskgygvgtpmgspyrkkitiailqlqeegk
lhmmkekww

Sequence, based on observed residues (ATOM records):

>d2xxyd_ c.94.1.0 (D:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
rslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirlvedgkyga
qdgqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgisilyrkgtpidsadd
lakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksneegiqrvltsdy
aflmesttiefvtqrncnltqigglidskgygvgtpmgspyrkkitiailqlqeegklhm
mkekww

Timeline for d2xxyd_:

• d2xxyd_ first appeared in SCOPe 2.04
  
• d2xxyd_ appears in SCOPe 2.07