SCOPe 2.04: Domain d2vsnb2: 2vsn B:193-568

Lineage for d2vsnb2 (2vsn B:193-568)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.87: UDP-Glycosyltransferase/glycogen phosphorylase [53755] (1 superfamily)
   consists of two non-similar domains with 3 layers (a/b/a) each
   domain 1: parallel beta-sheet of 7 strands, order 3214567
   domain 2: parallel beta-sheet of 6 strands, order 321456

4. Superfamily c.87.1: UDP-Glycosyltransferase/glycogen phosphorylase [53756] (13 families)

5. Family c.87.1.12: O-GlcNAc transferase, OGT [254190] (1 protein)
   Pfam PF13844; PubMed 18536723

6. Protein O-GlcNAc transferase, OGT [254419] (1 species)

7. Species Xanthomonas campestris [TaxId:314565] [254862] (1 PDB entry)

8. Domain d2vsnb2: 2vsn B:193-568 [243938]
   Other proteins in same PDB: d2vsna1, d2vsnb1
   complexed with udp

Details for d2vsnb2

PDB Entry: 2vsn, 2.75 Å

PDB Description: structure and topological arrangement of an o-glcnac transferase homolog: insight into molecular control of intracellular glycosylation

PDB Compounds: (B:) xcogt

SCOPe Domain Sequences for d2vsnb2:

Sequence; same for both SEQRES and ATOM records:

>d2vsnb2 c.87.1.12 (B:193-568) O-GlcNAc transferase, OGT {Xanthomonas campestris [TaxId: 314565]}
rplaptrvrskgplrvgfvsngfgahptglltvalfealqrrqpdlqmhlfatsgddgst
lrtrlaqastlhdvtalghlatakhirhhgidllfdlagwggggrpevfalrpapvqvnw
laypgtsgapwmdyvlgdafalppalepfysehvlrlqgafqpsdtsrvvaeppsrtqcg
lpeqgvvlccfnnsyklnpqsmarmlavlrevpdsvlwllsgpgeadarlrafahaqgvd
aqrlvfmpklphpqylaryrhadlfldthpynahttasdalwtgcpvlttpgetfaarva
gslnhhlgldemnvaddaafvakavalasdpaaltalharvdvlrrasgvfhmdgfaddf
gallqalarrhgwlgi

Timeline for d2vsnb2:

• d2vsnb2 is new in SCOPe 2.04-stable
  
• d2vsnb2 appears in SCOPe 2.05
  
• d2vsnb2 appears in the current release, SCOPe 2.08